View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9829_high_5 (Length: 426)
Name: NF9829_high_5
Description: NF9829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9829_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 416
Target Start/End: Original strand, 13170714 - 13171106
Alignment:
| Q |
17 |
aagtttcagtaacagaaaataaatatttgaatatggatggataatcgcaccaaaaaaggttgttgaatatggtttcattggnnnnnnnntgctggcgcat |
116 |
Q |
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| T |
13170714 |
aagttttagtaacagaaaataaatatttgaacatggat----aatcgcaccaaaaa-ggttgttgaatatggtttcattggaaaaaaa-tgctggtgcat |
13170807 |
T |
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| Q |
117 |
atagtggaagtgtgaaaattaaaaacgaattatttgggccattaacttagacggtcatatccatagtcaaaaaactaaaaggtgattgctcatctcacct |
216 |
Q |
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| T |
13170808 |
atagtggaagtatgaaaattaaaaatgaattatttgggccattaacttagacg-tcatatccatagtcaaaaaactaaaaggtgattgctcatctcatct |
13170906 |
T |
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| Q |
217 |
ccctaaaatgtgggtttttatggaaagtaagctttcttgtgtattttgtaggatgaactatatggggatctcttataggcgaatttttcaataggaactt |
316 |
Q |
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| T |
13170907 |
ccctaaaatgtgggtttttatggaaagtaagctttcttgtttattttgtaggatgaactatatggggatctcttataggcgaatttttcaataggaactt |
13171006 |
T |
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| Q |
317 |
tccaaattttattcttgaatttgatacttaagtgaatatccaacttattgatacaagttgttttgcactaacatttcttgatcagtgatttttctctgtg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13171007 |
tccaaattttattcttgaatttgatacttaagtgaatatccaacttattgatacaagttgttttgcactaacattttttgatcagtgatttttctctgtg |
13171106 |
T |
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