View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9829_low_1 (Length: 862)
Name: NF9829_low_1
Description: NF9829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9829_low_1 |
 | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 283 - 849
Target Start/End: Original strand, 45260671 - 45261234
Alignment:
| Q |
283 |
gaaattaagttctgagcttatttctcgaaatgagagatcatatatcaggtgggggcagtttcaatgagcatagcacattgcacgtgattcctccttaact |
382 |
Q |
| |
|
|||||| |||||| || |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45260671 |
gaaattcagttctaagtttatttctcggaatgagagatcatatgccaggtgggggcagtttcaatgagcatagcacattgcacatgattcctccttaact |
45260770 |
T |
|
| Q |
383 |
ataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacgaagaatgtttggtagca |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45260771 |
ataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatttccgtgtaaaacatctctaatatgaagaatgtttggtagca |
45260870 |
T |
|
| Q |
483 |
taagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcatggccnnnnnnnnnattta |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
45260871 |
taagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcatgaccttttttt---ttta |
45260967 |
T |
|
| Q |
583 |
caaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtggt |
682 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45260968 |
caaaaatcaagacccatctagatagcatgcaaatcagctaataacgcatcacctccaacttcatagtgagaaaaatcagttatccaatcttcatcgtggt |
45261067 |
T |
|
| Q |
683 |
tgcgaacaacaccaccaacacacaaagtctacaagaaagcagccatcaacattaagtttcagtccaccttttacagggggacccaatgagccaacataca |
782 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
45261068 |
tgcgaacaacaccaccaacacacaaagtctacaagaaagcaaccatcaacattaagtttcagtttaccttttgtagggggacccaatgagccaacataca |
45261167 |
T |
|
| Q |
783 |
cgatgagtgcgggtccagttcaagactgggataggttaagtttaggttgagttaaggagttgatgtc |
849 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45261168 |
cgatgagtgcgggtccagttcaagactgggataggttaagtttaggttgagttaaggagttgatgtc |
45261234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 45260086 - 45260224
Alignment:
| Q |
13 |
aaaaaattccttttaaaatcttcacgatggatcattaggacaaaagttagcaagattcatttttattaaacattcactaatgtaattaattacatattta |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45260086 |
aaaaatttccttttaaaatcttcacgatgggtcattaggacaaaagttagcgagattcatttttattaaacattcactaatgtaattaattacatattta |
45260185 |
T |
|
| Q |
113 |
aattatgttaatcgtttcaattattgttgaaatttgtta |
151 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45260186 |
aattatgttaatcgttccaattattgttgaaatttgtta |
45260224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 335 - 703
Target Start/End: Complemental strand, 15243646 - 15243283
Alignment:
| Q |
335 |
gggcagtttcaatgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgt |
434 |
Q |
| |
|
|||||||| || |||||| ||||| ||||| ||||| | |||||| | ||||||||||||| ||| | ||| ||| |||||||||||| |||| | || | |
|
|
| T |
15243646 |
gggcagttccagtgagcagagcaccttgcatgtgatccttccttagccataaaatatgcacacatgtattgttccctaagaacatgcaccaatgttgttt |
15243547 |
T |
|
| Q |
435 |
tgtcatctccgtgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattcca |
534 |
Q |
| |
|
| |||| | | |||||||||||||||||| |||| |||| | |||||||||||||||| ||||| ||| |||||| ||||||||| | || | ||| | |
|
|
| T |
15243546 |
tttcattttcatgtaaaacatctctaatatgaaggatgtgag-tagcataagtgtgcaaggtatgatcatgaccatcaataatcaggtcaactacttcaa |
15243448 |
T |
|
| Q |
535 |
agcaattactctcacaaataatgttgtcatggccnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcac |
634 |
Q |
| |
|
| |||| ||||| ||||||||||||| ||| || ||||||||| ||||| ||| |||||||| | ||||| |||||||||||||||| |
|
|
| T |
15243447 |
aacaatcactcttacaaataatgttgacataaccttttctac----tacaaaaattaagacatatcaagatagcacgtaactcggctaataacgcatcac |
15243352 |
T |
|
| Q |
635 |
gttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtggttgcgaacaacaccaccaacac |
703 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||| ||||||||||| |||||||||| ||||||| |
|
|
| T |
15243351 |
cttcaacttcatagtgcgaaaaaccagttatccaatctccatcgtggttgagaacaacacctccaacac |
15243283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 347 - 699
Target Start/End: Complemental strand, 12563433 - 12563088
Alignment:
| Q |
347 |
tgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgt |
446 |
Q |
| |
|
|||||||||||| ||||| ||||| | |||||||| ||||||| ||||| |||||||| ||| ||| |||||||| |||| | || || |||| ||| | |
|
|
| T |
12563433 |
tgagcatagcaccttgcatgtgatccttccttaaccataaaatctgcacacatatttttttcc-taaaaacatgcaccaatgttgtattttcatttccat |
12563335 |
T |
|
| Q |
447 |
gtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactct |
546 |
Q |
| |
|
||||| ||||||| || |||| |||| |||||||||||||| ||| ||||| ||||||||| ||||||||| | || | |||||| |||| ||||| |
|
|
| T |
12563334 |
gtaaagaatctctattatgaaggatgtc-ggtagcataagtgttcaaagtatgatcacgaccaacaataatcaggtcaactacttccaaacaatcactct |
12563236 |
T |
|
| Q |
547 |
cacaaataatgttgtcatggccnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcat |
646 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||| |||| ||||||| | || | || |||||||||||||| | || |||||| |
|
|
| T |
12563235 |
cacaaataatgttgatatggccttttttac----tacaaaaatcaagacctatctggatagcacgtaaattagataataacgcatcacctccagcttcat |
12563140 |
T |
|
| Q |
647 |
agtgagaaaaatcagttatccaatcttcatcgtggttgcgaacaacaccacca |
699 |
Q |
| |
|
|||||| |||| ||| |||||||||| |||||||||||| |||| ||| |||| |
|
|
| T |
12563139 |
agtgag-aaaaccagctatccaatctccatcgtggttgcaaacagcactacca |
12563088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 581 - 700
Target Start/End: Original strand, 28932426 - 28932545
Alignment:
| Q |
581 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
680 |
Q |
| |
|
|||||||| ||||||| |||| ||||||| | ||||||||||||||||||||| |||| ||||||||||||||||| || |||||||||| ||||||| |
|
|
| T |
28932426 |
tacaaaaaccaagacctatcttgatagcacgtaactcagctaataacgcatcagcttcagcttcatagtgagaaaaaccaactatccaatctccatcgtg |
28932525 |
T |
|
| Q |
681 |
gttgcgaacaacaccaccaa |
700 |
Q |
| |
|
||| ||||||||| |||||| |
|
|
| T |
28932526 |
gttacgaacaacaacaccaa |
28932545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 45260519 - 45260584
Alignment:
| Q |
150 |
tatcatttattcacatgatatcacttgttataatcctactatcctagtaacatttctttaaagttg |
215 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45260519 |
tatcatttattcacatgatatcacctgttataatcctactatcctagtaacatttctttaaagttg |
45260584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 613 - 696
Target Start/End: Original strand, 1758839 - 1758922
Alignment:
| Q |
613 |
aactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtggttgcgaacaacacca |
696 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |||| |
|
|
| T |
1758839 |
aactcagctaataacgcatcacctccaacttcatagtgagaaaaaccagctatccaatctccatcgtggttgcgaacaatacca |
1758922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 581 - 699
Target Start/End: Complemental strand, 23589865 - 23589747
Alignment:
| Q |
581 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
680 |
Q |
| |
|
||||||||| ||| | |||| ||||||| | |||||||||||||||||||||| | ||||||||||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
23589865 |
tacaaaaataaagttctatctggatagcacgtaactcagctaataacgcatcacctccaacttcatagtgggaaaactcagttatccaatctctatcgta |
23589766 |
T |
|
| Q |
681 |
gttgcgaacaacaccacca |
699 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
23589765 |
gttacgaacaacaccacca |
23589747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 581 - 699
Target Start/End: Complemental strand, 23810470 - 23810352
Alignment:
| Q |
581 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
680 |
Q |
| |
|
|||||||||||||||| ||| ||||||| | ||||||||||| |||||| ||| | ||||||||||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
23810470 |
tacaaaaatcaagacctttctggatagcacgtaactcagctaacaacgcaccacctccaacttcatagtgggaaaactcagttatccaatctctatcgta |
23810371 |
T |
|
| Q |
681 |
gttgcgaacaacaccacca |
699 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
23810370 |
gttacgaacaacaccacca |
23810352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 374 - 560
Target Start/End: Original strand, 1758615 - 1758800
Alignment:
| Q |
374 |
tccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacgaagaatgt |
473 |
Q |
| |
|
|||||| | ||||||| ||||| |||||||| || ||||||||||||||||| | || || ||| | | |||||| ||||||||||| |||| |||| |
|
|
| T |
1758615 |
tccttagccataaaatctgcacatatattttgtcccctaagaacatgcatcaatgttgtatttccattttcatgtaaatcatctctaatatgaaggatgt |
1758714 |
T |
|
| Q |
474 |
ttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttg |
560 |
Q |
| |
|
| | | |||||||||||||| ||||| |||| || | ||||||||| | || || |||||| |||| ||||||||||||||||||| |
|
|
| T |
1758715 |
tag-tggcataagtgtgcaaggtatgatcacaactagcaataatcaggtcaattgcttccaaacaatcactctcacaaataatgttg |
1758800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 335 - 690
Target Start/End: Complemental strand, 12608105 - 12607756
Alignment:
| Q |
335 |
gggcagtttcaatgagcatagcacattgcac--gtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagt |
432 |
Q |
| |
|
|||||||| ||||||||| ||||| || || ||||| | |||||| | ||||||| ||||| ||||||||| ||| || ||||||||| |||| | || |
|
|
| T |
12608105 |
gggcagttccaatgagcagagcaccttttacatgtgatccttccttagccataaaatctgcacacatattttgttccttatgaacatgcaccaatgttgt |
12608006 |
T |
|
| Q |
433 |
gttgtcatctccgtgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattc |
532 |
Q |
| |
|
|| ||| ||| |||||| ||||||||||| |||| |||| | |||||||||||||||| |||| | |||||||| ||||||||| | | || ||| |
|
|
| T |
12608005 |
atttccatttccatgtaaaccatctctaatatgaaggatgtcag-tagcataagtgtgcaagatatgattacgaccatcaataatcaggtctactgcttc |
12607907 |
T |
|
| Q |
533 |
caagcaattactctcacaaataatgttgtcatggccnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatc |
632 |
Q |
| |
|
||| |||| |||| ||||||||||||| ||| | ||||||||||||||| |||| |||||| | ||||| | ||||||| |||| |
|
|
| T |
12607906 |
caaacaatcactc--acaaataatgttgacataacttttttac-----tacaaaaatcaagacatatctgcatagcacgtaactcggttaataacacatc |
12607814 |
T |
|
| Q |
633 |
acgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtggttgcgaaca |
690 |
Q |
| |
|
| | |||||||||| ||||||||| ||| |||||||||| |||||||||| |||||| |
|
|
| T |
12607813 |
atttccaacttcataatgagaaaaaccagctatccaatctccatcgtggttacgaaca |
12607756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 477 - 560
Target Start/End: Original strand, 28932326 - 28932409
Alignment:
| Q |
477 |
gtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttg |
560 |
Q |
| |
|
|||| |||||||||||| ||||| ||||| ||| ||||||||| | || || |||||| |||| ||||||||||||||||||| |
|
|
| T |
28932326 |
gtagtataagtgtgcaaggtatgatcacggccagcaataatcaggtcaactgcttccaaacaatcactctcacaaataatgttg |
28932409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 411 - 473
Target Start/End: Original strand, 32826285 - 32826347
Alignment:
| Q |
411 |
taagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacgaagaatgt |
473 |
Q |
| |
|
|||||| ||||| |||| |||||||||||| | | |||||| |||||| |||||||||||||| |
|
|
| T |
32826285 |
taagaagatgcaccaatgtagtgttgtcattttcatgtaaagcatctccaatacgaagaatgt |
32826347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 2e-54; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 360 - 699
Target Start/End: Original strand, 41940534 - 41940866
Alignment:
| Q |
360 |
ttgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctct |
459 |
Q |
| |
|
||||| ||||| | |||||| | ||||||| ||||| |||||||| ||| ||||||||||||||||| | || || ||| ||| |||||||||||||| |
|
|
| T |
41940534 |
ttgcatgtgatccttccttagccataaaatttgcac--atattttgttccctaagaacatgcatcaatgttgtattaccatttccatgtaaaacatctct |
41940631 |
T |
|
| Q |
460 |
aatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgtt |
559 |
Q |
| |
|
|||| |||| |||| |||||||||||||||||| ||||| |||||||| | ||||||||| | || || || ||| |||| |||||||||||||||||| |
|
|
| T |
41940632 |
aatatgaaggatgtc-ggtagcataagtgtgcaaggtatgatcacgaccgtcaataatcaggtcaactgctttcaaacaatcactctcacaaataatgtt |
41940730 |
T |
|
| Q |
560 |
gtcatggccnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatc |
659 |
Q |
| |
|
| ||| ||| | ||||||||||||||||| || ||||||| | |||||||||||||||||||||| | || ||||||||||||||||| | |
|
|
| T |
41940731 |
gacatagcctttta----aattacaaaaatcaagacctattctgatagcacgtaactcagctaataacgcatcacctccagcttcatagtgagaaaaacc |
41940826 |
T |
|
| Q |
660 |
agttatccaatcttcatcgtggttgcgaacaacaccacca |
699 |
Q |
| |
|
|| |||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
41940827 |
agctatccaatctccatcgtggttgcgaacaccaccacca |
41940866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 581 - 703
Target Start/End: Complemental strand, 50945877 - 50945755
Alignment:
| Q |
581 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
680 |
Q |
| |
|
|||||||||||||||| |||| |||||| | |||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| |||| || |
|
|
| T |
50945877 |
tacaaaaatcaagacctatctggatagcgcgtaactcagctaataacgcatcaccttcagcttcatagtgagaaaaatcagctatccaatctccatcatg |
50945778 |
T |
|
| Q |
681 |
gttgcgaacaacaccaccaacac |
703 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
50945777 |
gttgtgaacaacaccaccaacac |
50945755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 347 - 559
Target Start/End: Original strand, 27184739 - 27184955
Alignment:
| Q |
347 |
tgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgt |
446 |
Q |
| |
|
|||||| ||||||||||||||||| | |||||| | ||||||||| || ||||||||| ||| || |||||||||| ||| | || || ||| | | | |
|
|
| T |
27184739 |
tgagcagagcacattgcacgtgatccttccttagccataaaatatacatacatattttgttccctatgaacatgcattaatgttgtattaccattttcat |
27184838 |
T |
|
| Q |
447 |
gtaaaacatctctaatacgaagaatgt----ttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaatta |
542 |
Q |
| |
|
||||||||||||||||| |||| |||| | |||||||| |||||||| ||||| |||||||||| |||||||| | || || |||||| |||| | |
|
|
| T |
27184839 |
gtaaaacatctctaatatgaaggatgtcatgtcagtagcatatgtgtgcaaggtatgatcacgaccatcaataatcaagtcaactgcttccaaacaatca |
27184938 |
T |
|
| Q |
543 |
ctctcacaaataatgtt |
559 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
27184939 |
ttctcacaaataatgtt |
27184955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 446 - 816
Target Start/End: Original strand, 47924343 - 47924717
Alignment:
| Q |
446 |
tgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactc |
545 |
Q |
| |
|
||||||||||||| |||| |||| |||| | |||||||||||||||| ||||| ||| || ||| ||||||||| | || || |||||| |||| |||| |
|
|
| T |
47924343 |
tgtaaaacatctcgaatatgaaggatgtcag-tagcataagtgtgcaaggtatgatcatgatcatcaataatcaggtcaactgcttccaaacaatcactc |
47924441 |
T |
|
| Q |
546 |
tcacaaataatgttgtcatggccnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttca |
645 |
Q |
| |
|
||||||||||||||| | | || |||||||||||||||| ||| ||||||| | || ||||||||||| ||||||| | |||||||| |
|
|
| T |
47924442 |
tcacaaataatgttgacttaaccttttttac----tacaaaaatcaagacctatccggatagcacgtaattcagctaataatgcatcacctccaacttca |
47924537 |
T |
|
| Q |
646 |
tagtgagaaaaatcagttatccaatcttcatcgtggttgcgaacaacaccaccaacac--------acaaagtctacaagaaagcagccatcaacattaa |
737 |
Q |
| |
|
||||| |||||| ||| ||||||||| ||| || | | ||||||||||| ||||||| |||| ||| | ||||||| |||||||| ||| | |
|
|
| T |
47924538 |
tagtgtgaaaaaccagcaatccaatctccattgtcgctacgaacaacaccgccaacacctaaacaaccaaaatcttctagaaagctgccatcaatattga |
47924637 |
T |
|
| Q |
738 |
gtttcagtccaccttttaca-gggggacccaatgagccaacatacacgatgagtgcgggtccagttcaagactgggatag |
816 |
Q |
| |
|
|||| ||| ||||| || | |||||| ||||||||| || | |||||||||||| ||||||| ||||| |||||||| |
|
|
| T |
47924638 |
gtttaagtgtaccttctagaggggggatccaatgagctaaaagacacgatgagtgtgggtccaaaccaagattgggatag |
47924717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 347 - 559
Target Start/End: Original strand, 40656118 - 40656329
Alignment:
| Q |
347 |
tgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgt |
446 |
Q |
| |
|
|||||||||||| | ||| |||||| |||||| ||||||| ||||| ||||||||| || | |||||||||| |||| | || || ||| ||| | |
|
|
| T |
40656118 |
tgagcatagcacctcgcatatgattcttccttagtcataaaatctgcacacatattttgttctcttagaacatgcaccaatgtcgtatttccatttccat |
40656217 |
T |
|
| Q |
447 |
gtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactct |
546 |
Q |
| |
|
||||||||||||| ||| ||| ||||| | ||| |||||||||||| ||||| ||||||||| ||||||||| | || || || ||| |||| ||||| |
|
|
| T |
40656218 |
gtaaaacatctctgatatgaaatatgttag-tagtataagtgtgcaaggtatgatcacgaccagcaataatcaggtcaactgctttcaaacaatcactct |
40656316 |
T |
|
| Q |
547 |
cacaaataatgtt |
559 |
Q |
| |
|
||||||||||||| |
|
|
| T |
40656317 |
cacaaataatgtt |
40656329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 381 - 468
Target Start/End: Complemental strand, 25969860 - 25969773
Alignment:
| Q |
381 |
ctataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacgaag |
468 |
Q |
| |
|
||||||||||||||| ||||||||| ||| |||||||||||| |||| | || || |||| ||| |||||||||||||||||| |||| |
|
|
| T |
25969860 |
ctataaaatatgcacacatattttgttccttaagaacatgcaccaatgttgtattttcatttccatgtaaaacatctctaatatgaag |
25969773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 584 - 699
Target Start/End: Complemental strand, 54259293 - 54259179
Alignment:
| Q |
584 |
aaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtggtt |
683 |
Q |
| |
|
||||||||||||| |||| ||||||| | ||||||||||| ||| |||||| | || || |||||||||||||| ||| |||||| ||| || |||||| |
|
|
| T |
54259293 |
aaaaatcaagacctatctggatagcacgtaactcagctaacaacccatcacctccagct-catagtgagaaaaaccagctatccattctccaatgtggtt |
54259195 |
T |
|
| Q |
684 |
gcgaacaacaccacca |
699 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
54259194 |
gcgaacaataccacca |
54259179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 581 - 697
Target Start/End: Original strand, 40656348 - 40656463
Alignment:
| Q |
581 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
680 |
Q |
| |
|
||||||||||||||| || | |||| || | ||||||||||||||||||||| | ||||||| |||| |||||| ||||||| |||||| || ||| |
|
|
| T |
40656348 |
tacaaaaatcaagacatatatggataacacgttactcagctaataacgcatcacttctaacttcacagtg-gaaaaaccagttattcaatctctattgtg |
40656446 |
T |
|
| Q |
681 |
gttgcgaacaacaccac |
697 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
40656447 |
gttgcgaacaacaccac |
40656463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 581 - 696
Target Start/End: Complemental strand, 25969430 - 25969315
Alignment:
| Q |
581 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
680 |
Q |
| |
|
|||||||||||||||| |||| ||||| | | |||||| |||||| | ||| | | | ||||||||||||||||| || |||||||||| ||||||| |
|
|
| T |
25969430 |
tacaaaaatcaagacctatctggatagtacgtaactcaactaatagcacatggcttcgagcttcatagtgagaaaaaccaactatccaatctccatcgtg |
25969331 |
T |
|
| Q |
681 |
gttgcgaacaacacca |
696 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25969330 |
attgcgaacaacacca |
25969315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 582 - 703
Target Start/End: Complemental strand, 24015954 - 24015833
Alignment:
| Q |
582 |
acaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtgg |
681 |
Q |
| |
|
|||||||||||||| ||| | ||| || |||||||| | || || ||||||| | |||||||||| |||||| || | ||| |||||| |||||||| |
|
|
| T |
24015954 |
acaaaaatcaagacacatttcaataacacgcaactcaaccaacaatgcatcacctccaacttcatatgaagaaaagtcggctattcaatctccatcgtgg |
24015855 |
T |
|
| Q |
682 |
ttgcgaacaacaccaccaacac |
703 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
24015854 |
ttgcgaacaaccccaccaacac |
24015833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 366 - 473
Target Start/End: Original strand, 29969133 - 29969240
Alignment:
| Q |
366 |
gtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacg |
465 |
Q |
| |
|
||||| ||| |||| | ||||||||| || ||| |||||||| |||||| |||||||||||||||||| |||| || |||||| | |||||||||| | |
|
|
| T |
29969133 |
gtgatcccttcttagccataaaatattaacacatgttttgctctttaagaatatgcatcaatatagtgttatcatttctgtgtaagatatctctaatatg |
29969232 |
T |
|
| Q |
466 |
aagaatgt |
473 |
Q |
| |
|
||| |||| |
|
|
| T |
29969233 |
aaggatgt |
29969240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 339 - 462
Target Start/End: Complemental strand, 50946116 - 50945993
Alignment:
| Q |
339 |
agtttcaatgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtc |
438 |
Q |
| |
|
||||||| |||||| |||| ||||| ||||| | |||||| | ||||||| | ||||||||||||| || ||| ||||||||||||| | || || || |
|
|
| T |
50946116 |
agtttcagtgagcagagcatcttgcatgtgatccttccttagcaataaaatctacacgcatattttgttctctaaaaacatgcatcaatgttgtattttc |
50946017 |
T |
|
| Q |
439 |
atctccgtgtaaaacatctctaat |
462 |
Q |
| |
|
|| | | ||||||||||||||||| |
|
|
| T |
50946016 |
attttcatgtaaaacatctctaat |
50945993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 1e-46; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 347 - 699
Target Start/End: Complemental strand, 4653836 - 4653488
Alignment:
| Q |
347 |
tgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgt |
446 |
Q |
| |
|
|||||| ||||| ||| | ||||| | |||||| | ||||||| ||||| ||||||||| || || |||||||| | ||||||||| || ||| ||| | |
|
|
| T |
4653836 |
tgagcagagcaccttgtatgtgatccttccttagccataaaatttgcacacatattttgttctatgagaacatgtaccaatatagtatttccatttccat |
4653737 |
T |
|
| Q |
447 |
gtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactct |
546 |
Q |
| |
|
||| | ||||| ||||| ||| ||||| | ||||||||||||| || ||||| |||||||||| ||||||||| | || || |||||| |||| ||||| |
|
|
| T |
4653736 |
gtagagcatctttaatatgaaagatgttag-tagcataagtgtgtaaggtatgatcacgaccatcaataatcaggtcaactgcttccaaacaatcactct |
4653638 |
T |
|
| Q |
547 |
cacaaataatgttgtcatggccnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcat |
646 |
Q |
| |
|
||||||||||||| ||| ||| |||||||||||||||| |||| ||||||| | |||||| ||| ||||||||||| | || |||||| |
|
|
| T |
4653637 |
cacaaataatgttaacatagccttttattac---tacaaaaatcaagacctatctggatagcacgtaactcacctagtaacgcatcacctccagcttcat |
4653541 |
T |
|
| Q |
647 |
agtgagaaaaatcagttatccaatcttcatcgtggttgcgaacaacaccacca |
699 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4653540 |
ggtgagaaaaatcagctatccaatctccatcgtggttgcgaacaacaccacca |
4653488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 360 - 699
Target Start/End: Complemental strand, 44440564 - 44440230
Alignment:
| Q |
360 |
ttgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctct |
459 |
Q |
| |
|
||||| ||||| | |||||||| ||||||| ||||| ||||||||| ||| |||||||||||| |||| | || || |||| | | |||||||||||||| |
|
|
| T |
44440564 |
ttgcatgtgatccttccttaaccataaaatctgcacacatattttgttccctaagaacatgcaccaatgttgtattttcattttcatgtaaaacatctct |
44440465 |
T |
|
| Q |
460 |
aatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgtt |
559 |
Q |
| |
|
|||| |||| ||| || ||||||||||||||||| ||||| |||||||||| |||||| | | || |||||| |||| |||||||||||||||||| |
|
|
| T |
44440464 |
aatatgaaggatg-ttagtagcataagtgtgcaaggtatgatcacgaccatcaataattgagtcatctgcttccaaacaatcactctcacaaataatgtt |
44440366 |
T |
|
| Q |
560 |
gtcatggccnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatc |
659 |
Q |
| |
|
| ||| ||| ||||||||||||||| |||| ||| || ||||| |||||||||| ||||| | |||||||||||||||||||| | |
|
|
| T |
44440365 |
gacatagccttttttac----tacaaaaatcaagacatatctgaataacacataactctgctaataacgtatcacatacaacttcatagtgagaaaaacc |
44440270 |
T |
|
| Q |
660 |
agttatccaatcttcatcgtggttgcgaacaacaccacca |
699 |
Q |
| |
|
|| || | ||||| ||||||||||||||||||| |||||| |
|
|
| T |
44440269 |
agctacctaatctccatcgtggttgcgaacaacgccacca |
44440230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 347 - 699
Target Start/End: Original strand, 8271094 - 8271444
Alignment:
| Q |
347 |
tgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgt--catctcc |
444 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||| | ||||||| |||| ||||||||| ||| |||||||||| | || | | |||| | ||| | | |
|
|
| T |
8271094 |
tgagcatagcatcttgcatgtgattcttccttagccataaaatctgcatacatattttgttccctaagaacatgaaccactgttgtgtatttccattttc |
8271193 |
T |
|
| Q |
445 |
gtgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattact |
544 |
Q |
| |
|
|||||| ||||||||||| |||| | || | || ||||||||||||| ||||| |||| |||| | ||||||| | || || |||||| |||| ||| |
|
|
| T |
8271194 |
atgtaaagcatctctaatatgaaggacgtcag-taacataagtgtgcaaggtatgatcacaaccagcagtaatcaggtcaactgcttccaaacaatcact |
8271292 |
T |
|
| Q |
545 |
ctcacaaataatgttgtcatggccnnnnnnnnnatttacaaaaa-tcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaactt |
643 |
Q |
| |
|
|||||||||||||||| ||| || | |||||||| |||||||| || | |||| | | |||||||||||||||||||||| | |||||| |
|
|
| T |
8271293 |
ctcacaaataatgttgacataaccttttct----tctacaaaaaatcaagacctatttggataacgcgtaactcagctaataacgcatcacctccaactt |
8271388 |
T |
|
| Q |
644 |
catagtgagaaaaatcagttatccaatcttcatcgtggttgcgaacaacaccacca |
699 |
Q |
| |
|
|||| ||||||||| ||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8271389 |
cataatgagaaaaaccagctatccaatctccatcgtggttgcgaacaacaccacca |
8271444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 446 - 703
Target Start/End: Complemental strand, 37193062 - 37192809
Alignment:
| Q |
446 |
tgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactc |
545 |
Q |
| |
|
|||||||||||||||||| |||| |||| | |||||||| ||||||| |||| |||||||||| ||||||||| |||| || |||||| |||| ||| |
|
|
| T |
37193062 |
tgtaaaacatctctaatatgaaggatgtaag-tagcataaatgtgcaagatatgatcacgaccatcaataatcaggttaactgtttccaaacaatcactt |
37192964 |
T |
|
| Q |
546 |
tcacaaataatgttgtcatggccnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttca |
645 |
Q |
| |
|
||| ||||||||||| || | |||||||||||| || |||| |||| || | ||||||| |||||||| ||||| | ||| |||| |
|
|
| T |
37192963 |
tcaaaaataatgttgacacaaaccttttagac---tacaaaaatcaaaacttatctggatatcacgtaactcagttaataacgtatcacctccaatttca |
37192867 |
T |
|
| Q |
646 |
tagtgagaaaaatcagttatccaatcttcatcgtggttgcgaacaacaccaccaacac |
703 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37192866 |
tagtgagaaaaattagttatccaatcaccatcgtggttgcgaacaacaccaccaacac |
37192809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 383 - 699
Target Start/End: Original strand, 6571037 - 6571348
Alignment:
| Q |
383 |
ataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacgaagaatgtttggtagca |
482 |
Q |
| |
|
||||||| ||||| | ||||||| ||| |||||||||| | ||||| || || || ||| || ||| ||||||||||| |||| |||| | ||||| |
|
|
| T |
6571037 |
ataaaatctgcacacgtattttgttccctaagaacatgtactaatattgtatttctatttccatgcaaagcatctctaatatgaaggatgtcag-tagca |
6571135 |
T |
|
| Q |
483 |
taagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcatggccnnnnnnnnnattta |
582 |
Q |
| |
|
|||||||| || |||| ||||||||| ||||||||| | || || |||| | |||| || |||||||||||||||| ||| ||| || |
|
|
| T |
6571136 |
taagtgtgtaagttatgatcacgaccagcaataatcaggtcaactgtttccgaacaatcaccctcacaaataatgttgacatagccttttctactat--- |
6571232 |
T |
|
| Q |
583 |
caaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtggt |
682 |
Q |
| |
|
||||||||||||| || | ||||||| ||||||||||| |||||||||| | || ||||||||||||||||||||| | ||||||| ||||||||| |
|
|
| T |
6571233 |
-aaaaatcaagacctatttggatagcacataactcagctaacaacgcatcacctccagcttcatagtgagaaaaatcagccacccaatctccatcgtggt |
6571331 |
T |
|
| Q |
683 |
tgcgaacaacaccacca |
699 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6571332 |
tgcgaacaacaccacca |
6571348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 383 - 560
Target Start/End: Original strand, 45036061 - 45036237
Alignment:
| Q |
383 |
ataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacgaagaatgtttggtagca |
482 |
Q |
| |
|
||||||| ||||| ||| ||||| ||| |||||||||||| ||| | || || |||| | | |||||||||||||||||| |||| |||| | ||||| |
|
|
| T |
45036061 |
ataaaatttgcacacatgttttgttccctaagaacatgcactaatgttgtattttcattttcatgtaaaacatctctaatatgaaggatgtcag-tagca |
45036159 |
T |
|
| Q |
483 |
taagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttg |
560 |
Q |
| |
|
||||||||||| ||||| ||| ||||| ||||||||| | || || |||||| |||| ||||||||||||||||||| |
|
|
| T |
45036160 |
taagtgtgcaaggtatgatcatcaccatcaataatcaggtcaactgcttccaaacaatcactctcacaaataatgttg |
45036237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 5e-46; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 282 - 699
Target Start/End: Complemental strand, 11076067 - 11075654
Alignment:
| Q |
282 |
tgaaattaagttctgagcttatttctcgaaatgagagatcatatatcaggtgg-gggcagtttcaatgagcatagcacattgcacgtgattcctccttaa |
380 |
Q |
| |
|
|||||||||||| | ||||||| |||| |||||||||| || |||| || |||||||| ||||||||| || || ||||| ||||||| |||||| |
|
|
| T |
11076067 |
tgaaattaagttttaagcttatctctcagaatgagagatttcatttcagacggagggcagttccaatgagcagagtactttgcatgtgattcttccttag |
11075968 |
T |
|
| Q |
381 |
ctataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacgaagaatgtttggtag |
480 |
Q |
| |
|
| |||||| | ||| ||||||||| || || ||||||||| |||| | || || ||| | | |||||| ||||| ||||| |||| ||||| | ||| |
|
|
| T |
11075967 |
ccataaaacctacacacatattttgttcgttaggaacatgcaccaatgttgtatttccattttcatgtaaagcatctttaatatgaaggatgttag-tag |
11075869 |
T |
|
| Q |
481 |
cataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcatggccnnnnnnnnnatt |
580 |
Q |
| |
|
||||||||||||| ||||| ||||||| | |||||||| | || || |||||| |||| ||||||||||||||||||| ||| ||| | |
|
|
| T |
11075868 |
cataagtgtgcaaggtatgatcacgacaagcaataatcaagtcaactgcttccaaacaatcactctcacaaataatgttgacatagccttttt----aac |
11075773 |
T |
|
| Q |
581 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
680 |
Q |
| |
|
|||||||||||||||| |||| ||||||| | |||||||||||||||||||||| | || |||||||||| |||||| |||||||| ||||| |||||| |
|
|
| T |
11075772 |
tacaaaaatcaagacctatctggatagcacgtaactcagctaataacgcatcacctccagcttcatagtgggaaaaaccagttatctaatctctatcgtg |
11075673 |
T |
|
| Q |
681 |
gttgcgaacaacaccacca |
699 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
11075672 |
gttgcgaacaacaccacca |
11075654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 335 - 696
Target Start/End: Original strand, 16824064 - 16824419
Alignment:
| Q |
335 |
gggcagtttcaatgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgt |
434 |
Q |
| |
|
|||||||| || |||||| ||||| ||||| ||||| | | |||| | ||||||| || || ||||||||| ||| ||||||||||| |||| | || | |
|
|
| T |
16824064 |
gggcagttccattgagcagagcaccttgcatgtgatcctttcttagccataaaatttgtacacatattttgttccctaagaacatgcgccaatgttgtat |
16824163 |
T |
|
| Q |
435 |
tgtcatctccgtgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattcca |
534 |
Q |
| |
|
| |||| | | |||||| ||||||||||| |||| |||| | |||||||||||||||| ||||| || |||||| ||||||||| | || || ||||| |
|
|
| T |
16824164 |
tttcattttcatgtaaagcatctctaatatgaaggatgtcag-tagcataagtgtgcaaagtatgatctcgaccagcaataatcaggtcaactgcttcca |
16824262 |
T |
|
| Q |
535 |
agcaattactctcacaaataatgttgtcatggccnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcac |
634 |
Q |
| |
|
| ||| ||||||||||||||||||| ||| || || |||||||||||| ||| |||| || | |||||||||||||||||||||| |
|
|
| T |
16824263 |
aacaac-actctcacaaataatgttgacataaccttttttactat----aaaaatcaagacatatcaggataacacgtaactcagctaataacgcatcac |
16824357 |
T |
|
| Q |
635 |
gttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtggttgcgaacaacacca |
696 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
16824358 |
ctcccgcttcatagtgagaaaaatcagttatccaatctccattgtggttgcgaacaacacca |
16824419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 374 - 702
Target Start/End: Original strand, 39997500 - 39997823
Alignment:
| Q |
374 |
tccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacgaagaatgt |
473 |
Q |
| |
|
|||||| | ||||||| ||||| ||||||||||||| ||||||||||||||||| | ||||| || || || ||| ||||||||||| || |||||| |
|
|
| T |
39997500 |
tccttagccataaaatttgcacacatattttgctccctaagaacatgcatcaatgttgtgtttctattcccatggaaagcatctctaatatgatgaatgt |
39997599 |
T |
|
| Q |
474 |
ttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcatggccnnnnn |
573 |
Q |
| |
|
| |||||||||| ||||| ||||| ||||||||| ||||||||| | || || || ||| |||| ||||||| ||||||||||| ||| || |
|
|
| T |
39997600 |
aag-tagcataagtttgcaaggtatgatcacgaccagcaataatcaggtcaactgctttcaaacaatcactctcataaataatgttggcataaccttttt |
39997698 |
T |
|
| Q |
574 |
nnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatctt |
673 |
Q |
| |
|
|||||||||||||||| ||| ||||||| | |||||||| ||||| |||||| | |||||| |||||||||||| ||| ||||| |||| |
|
|
| T |
39997699 |
tac----tacaaaaatcaagacctgtctggatagcacgtcactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctg |
39997794 |
T |
|
| Q |
674 |
catcgtggttgcgaacaacaccaccaaca |
702 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
39997795 |
catcgtggttgcgaacaacaccaccaaca |
39997823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 400 - 683
Target Start/End: Complemental strand, 9427824 - 9427547
Alignment:
| Q |
400 |
attttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatg |
499 |
Q |
| |
|
|||||| ||| ||||||||||| |||| | || || ||| ||| |||||||||||||||||| |||| |||| | ||| |||| ||||||| ||||| |
|
|
| T |
9427824 |
attttgttccctaagaacatgcgccaatcttgtattaccatttccatgtaaaacatctctaatatgaaggatgtcag-tagtataaatgtgcaaggtatg |
9427726 |
T |
|
| Q |
500 |
ttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcatggccnnnnnnnnnatttacaaaaatcaagacccat |
599 |
Q |
| |
|
|||||||||| | ||| || | || ||| ||||| |||| ||||||||||||||||||| ||| || |||||||||||||||| || |
|
|
| T |
9427725 |
atcacgaccatcagtaagcatgtcaactgaatccaaacaatcactctcacaaataatgttggcatagcattttagac----tacaaaaatcaagacctat |
9427630 |
T |
|
| Q |
600 |
ctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtggtt |
683 |
Q |
| |
|
|| |||||| | |||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
9427629 |
ctgaatagcacggaactcagctaataacgcatcacct-caacttcatagtgagaaaaatcagttattcaatctccatcgtggtt |
9427547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 368 - 703
Target Start/End: Original strand, 3620874 - 3621202
Alignment:
| Q |
368 |
gattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacgaa |
467 |
Q |
| |
|
|||||||||||| | ||||||| || || ||| ||||| || |||||||||||| ||| ||||||| |||| ||| ||||||| |||||||||| ||| |
|
|
| T |
3620874 |
gattcctccttagccataaaatttgtacacatgttttgttctctaagaacatgcactaatgtagtgttatcatttccatgtaaaatatctctaatatgaa |
3620973 |
T |
|
| Q |
468 |
gaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcatggc |
567 |
Q |
| |
|
| |||| | || ||||||| || || ||||| ||||||||| || || || || ||| | |||||||||| |||||||||||||||||||| || || |
|
|
| T |
3620974 |
ggatgtcag-taacataagtatgtaaggtatgatcacgaccaacaacaaacatctcaaacgcttccaagcaaccactctcacaaataatgttgttatagc |
3621072 |
T |
|
| Q |
568 |
cnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatcc |
667 |
Q |
| |
|
| | |||||||||||| |||||| |||||| |||||||||| || || |||||| |||||||| | || ||||||| ||| ||||| |
|
|
| T |
3621073 |
ctttgttgcga----caaaaatcaagatccatctgaatagcacgcaactcagccaa--acacatcaccttcaactttaaagcaagaaaaaccagctatcc |
3621166 |
T |
|
| Q |
668 |
aatcttcatcgtggttgcgaacaacaccaccaacac |
703 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
3621167 |
aatctccatcgtggttgggaacaccaccaccaacac |
3621202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 582 - 741
Target Start/End: Complemental strand, 26479492 - 26479333
Alignment:
| Q |
582 |
acaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtgg |
681 |
Q |
| |
|
|||||||||||||| || || |||||| ||| ||||||||||| |||||||| | ||||||||||||| |||||| ||| |||| ||||| ||| ||| |
|
|
| T |
26479492 |
acaaaaatcaagacatatataaatagcacgcagctcagctaatagcgcatcacctccaacttcatagtgcgaaaaaccagctatcaaatctccataatgg |
26479393 |
T |
|
| Q |
682 |
ttgcgaacaacaccaccaacacacaaagtctacaagaaagcagccatcaacattaagttt |
741 |
Q |
| |
|
||| |||||||||||||||||| || ||||| | || |||| ||||||| ||||||||| |
|
|
| T |
26479392 |
ttgtgaacaacaccaccaacacccagagtcttctagcaagctaccatcaatattaagttt |
26479333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 581 - 699
Target Start/End: Complemental strand, 8266674 - 8266556
Alignment:
| Q |
581 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
680 |
Q |
| |
|
|||||||||||||||| |||| ||||| | | |||||||||||||| ||| ||| | |||||||||||||||||||| ||||||| ||||| | ||||| |
|
|
| T |
8266674 |
tacaaaaatcaagacctatctggatagtacgtaactcagctaataatgcaccacctccaacttcatagtgagaaaaactagttatcgaatctccgtcgtg |
8266575 |
T |
|
| Q |
681 |
gttgcgaacaacaccacca |
699 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
8266574 |
gttgcgcacaacaccacca |
8266556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 581 - 699
Target Start/End: Complemental strand, 2887480 - 2887362
Alignment:
| Q |
581 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
680 |
Q |
| |
|
|||||||||||||||| || | |||| || | ||| |||||||||||||||||| | || | ||||||||||||||| ||| ||| |||||| |||||| |
|
|
| T |
2887480 |
tacaaaaatcaagacctatttggatatcacgtaacgcagctaataacgcatcacctccagcatcatagtgagaaaaaccagctattcaatctctatcgtg |
2887381 |
T |
|
| Q |
681 |
gttgcgaacaacaccacca |
699 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2887380 |
gttgcgaacaacaccacca |
2887362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 478 - 668
Target Start/End: Complemental strand, 18565879 - 18565693
Alignment:
| Q |
478 |
tagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcatggccnnnnnnnnn |
577 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||| | || | || ||| |||| ||||||||||||||||||| || | | |
|
|
| T |
18565879 |
tagcataagtgtgcaatgtataatcacgaccatcaataatcaggtcaactactttcaaacaatcactctcacaaataatgttgagatagtcttttggac- |
18565781 |
T |
|
| Q |
578 |
atttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatcca |
668 |
Q |
| |
|
|||||||||| |||| |||| ||||||| | ||||||||||||||| |||||| | || ||||||||||| ||||||||| |||||| |
|
|
| T |
18565780 |
---tacaaaaatcgagactaatctggatagcacgtaactcagctaataacacatcacctccagcttcatagtgaaaaaaatcagctatcca |
18565693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 328 - 430
Target Start/End: Complemental strand, 7859500 - 7859398
Alignment:
| Q |
328 |
caggtgggggcagtttcaatgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaat |
427 |
Q |
| |
|
|||||||| |||||| ||| ||||| || || ||||| ||| |||||||||| | ||||| | ||||| ||||||||| | | |||||||||||| |||| |
|
|
| T |
7859500 |
caggtgggagcagttccaacgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcttaagaacatgcaccaat |
7859401 |
T |
|
| Q |
428 |
ata |
430 |
Q |
| |
|
||| |
|
|
| T |
7859400 |
ata |
7859398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 564
Target Start/End: Complemental strand, 26479557 - 26479506
Alignment:
| Q |
513 |
ataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcat |
564 |
Q |
| |
|
|||||||||| || ||||||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
26479557 |
ataatcagctcaactgattccaaacaatcactctcacaaataatattgtcat |
26479506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 338 - 703
Target Start/End: Original strand, 54724 - 55084
Alignment:
| Q |
338 |
cagtttcaatgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgt |
437 |
Q |
| |
|
||||| || |||||| ||||| ||||| ||||||| |||||| | ||||| | ||||| ||||||||| ||| ||| |||||||| |||| | || || |
|
|
| T |
54724 |
cagttccagtgagcagagcaccttgcatgtgattcttccttagccataaagtctgcacacatattttgttccctaaaaacatgcaacaatgttgtattac |
54823 |
T |
|
| Q |
438 |
catctccgtgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagc |
537 |
Q |
| |
|
||| ||| |||||||||||||||||| |||| |||| | | ||||| ||||||| ||||| |||||||||| ||||||||| | | | |||||| | |
|
|
| T |
54824 |
catttccatgtaaaacatctctaatatgaaggatgtcagcaa-cataaatgtgcaaggtatgatcacgaccatcaataatcaggtcacctacttccaaac |
54922 |
T |
|
| Q |
538 |
aattactctcacaaataatgttgtcatggccnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgtt |
637 |
Q |
| |
|
||| |||||||||||||||||| ||| ||| |||||||||||||||| |||| ||| || | ||||||||||||||| ||||| | |
|
|
| T |
54923 |
aatcactctcacaaataatgttcacatagcctttcagac----tacaaaaatcaagacctatctgaataacacgtaactcagctaataacaaatcacctc |
55018 |
T |
|
| Q |
638 |
caacttcatagtgagaaaaatcagttatccaatcttcatcgtggttgcgaacaacaccaccaacac |
703 |
Q |
| |
|
|| ||||||||||||||||| ||| |||||||||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
55019 |
cagcttcatagtgagaaaaaccagctatccaatctccatcgtgattgcaaacaacaccaccaacac |
55084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 2e-36; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 337 - 703
Target Start/End: Original strand, 7320138 - 7320496
Alignment:
| Q |
337 |
gcagtttcaatgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttg |
436 |
Q |
| |
|
|||||||||||||||| | ||| ||||| | ||| | | |||| | ||||||| ||||| ||||||||| ||| ||||| |||||| |||||| || || |
|
|
| T |
7320138 |
gcagtttcaatgagcagatcaccttgcatgagatcctttcttagccataaaatctgcacacatattttgttcc-taagagcatgcaccaatattgtattt |
7320236 |
T |
|
| Q |
437 |
tcatctccgtgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaag |
536 |
Q |
| |
|
||| ||| |||||| || |||||||| |||| |||| | |||||||||||||||||||||| ||||| ||| |||||||| | | | |||||| |
|
|
| T |
7320237 |
ccatttccatgtaaagcaactctaatatgaaggatgtc-gatagcataagtgtgcaatgtatgatcacg-ccaacaataatcaagtctagttcttccaaa |
7320334 |
T |
|
| Q |
537 |
caattactctcacaaataatgttgtca-tggccnnnnnnnnnatttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacg |
635 |
Q |
| |
|
|||| |||||||| |||||||||| || || || |||||||||||||||| ||| ||||||| | || ||||||||||||||||||| |
|
|
| T |
7320335 |
caatcactctcactaataatgttgacaatgtccttttac------tacaaaaatcaagacctgtctggatagcacgtaattcagctaataacgcatcacc |
7320428 |
T |
|
| Q |
636 |
ttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtggttgcgaacaacaccaccaacac |
703 |
Q |
| |
|
| || ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
7320429 |
tccagcttcatagtgagaaaaaccagttatccagtctccatcgtggttgcgaacaacaccaccaacac |
7320496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 349 - 558
Target Start/End: Complemental strand, 17508867 - 17508659
Alignment:
| Q |
349 |
agcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgt |
448 |
Q |
| |
|
|||| ||||| ||||| ||||| | |||| |||||||||||||||| ||||||||| ||| |||||||||||| |||| | || || | | | | ||| |
|
|
| T |
17508867 |
agcagagcaccttgcatgtgatccttcctaaactataaaatatgcaaacatattttgttccctaagaacatgcaccaatgttgtattaccgttttcatgt |
17508768 |
T |
|
| Q |
449 |
aaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctca |
548 |
Q |
| |
|
||||||||||||||| |||| |||| | |||||||||| ||||| ||||| |||||||||| |||||||| | || || |||||| ||| ||||||| |
|
|
| T |
17508767 |
aaaacatctctaatatgaaggatgtcag-tagcataagtatgcaacgtatgatcacgaccatcaataatcaagtcaactgcttccaaacaagcactctca |
17508669 |
T |
|
| Q |
549 |
caaataatgt |
558 |
Q |
| |
|
|||||||||| |
|
|
| T |
17508668 |
caaataatgt |
17508659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 478 - 703
Target Start/End: Complemental strand, 43445491 - 43445268
Alignment:
| Q |
478 |
tagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcatggccnnnnnnnnn |
577 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| |||||| || | || || |||||| |||||||||||||||||||||||| ||| | |
|
|
| T |
43445491 |
tagcataagtgtgcaaggtatgatcacgaccgacaataataaggtcaactgcttccaaacaattactctcacaaataatgttgacatag-----tttttt |
43445397 |
T |
|
| Q |
578 |
atttac---aaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttc |
674 |
Q |
| |
|
||||| |||||||||||| || | ||||| | | ||||||| |||||||||||||| | |||||||||||||| ||||| ||| |||||||| | | |
|
|
| T |
43445396 |
ttttactataaaaatcaagacatatatggatagtacgtaactcagataataacgcatcacctccaacttcatagtgataaaaaacagatatccaatttcc |
43445297 |
T |
|
| Q |
675 |
atcgtggttgcgaacaacaccaccaacac |
703 |
Q |
| |
|
||||||||||||||| ||||||||||||| |
|
|
| T |
43445296 |
atcgtggttgcgaactacaccaccaacac |
43445268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 613 - 699
Target Start/End: Original strand, 53590285 - 53590371
Alignment:
| Q |
613 |
aactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtggttgcgaacaacaccacca |
699 |
Q |
| |
|
||||||||| ||||| |||||| | |||||| ||||||||||||| ||| |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
53590285 |
aactcagctgataacacatcacctccaactttatagtgagaaaaaccagctatcaaatctccatcgtggttgcgaacaacaccacca |
53590371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 336 - 560
Target Start/End: Complemental strand, 50426137 - 50425914
Alignment:
| Q |
336 |
ggcagtttcaatgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgtt |
435 |
Q |
| |
|
||||||| || |||||| ||||||||||| ||||| | ||||| | |||||||||||| ||||||||| ||| ||| || ||||| ||| | || || |
|
|
| T |
50426137 |
ggcagttccagtgagcaaagcacattgcatgtgatccttccttggccataaaatatgcatacatattttgttccttaaaaatatgcacaaatgttgtatt |
50426038 |
T |
|
| Q |
436 |
gtcatctccgtgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaa |
535 |
Q |
| |
|
|||| |||||||||| |||||||| || |||| ||| | || ||||||||| ||| ||||| |||||| || ||||||||| | || || |||||| |
|
|
| T |
50426037 |
ttcatttccgtgtaaatcatctctagtatgaaggatg-tcagtgacataagtgtacaaggtatgatcacgatcagcaataatcaggtcaactgcttccaa |
50425939 |
T |
|
| Q |
536 |
gcaattactctcacaaataatgttg |
560 |
Q |
| |
|
|||| ||||| |||||||| |||| |
|
|
| T |
50425938 |
acaatcactcttacaaataacgttg |
50425914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 3e-32; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 581 - 700
Target Start/End: Original strand, 25828598 - 25828717
Alignment:
| Q |
581 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
680 |
Q |
| |
|
|||||||||||||||| || | ||||||| | || ||||||||||||||||||| | ||||||||||| |||||||| |||||||||||||| |||| || |
|
|
| T |
25828598 |
tacaaaaatcaagacctatatggatagcacgtaattcagctaataacgcatcacttccaacttcatagcgagaaaaaccagttatccaatctccatcatg |
25828697 |
T |
|
| Q |
681 |
gttgcgaacaacaccaccaa |
700 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
25828698 |
gttgcgaacaacaccaccaa |
25828717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 581 - 703
Target Start/End: Original strand, 5464761 - 5464883
Alignment:
| Q |
581 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
680 |
Q |
| |
|
|||||||||||||| | |||| ||||| | | ||||||||||||||| |||||| | ||||||||||||||| |||| | | |||||||||| ||||||| |
|
|
| T |
5464761 |
tacaaaaatcaagaactatctggatagtacgtaactcagctaataacacatcacctccaacttcatagtgagcaaaacctgctatccaatctccatcgtg |
5464860 |
T |
|
| Q |
681 |
gttgcgaacaacaccaccaacac |
703 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
5464861 |
gttgcgaacaacaccaccaacac |
5464883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 347 - 560
Target Start/End: Original strand, 10328940 - 10329156
Alignment:
| Q |
347 |
tgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgt |
446 |
Q |
| |
|
|||||| ||||| ||||| ||||| | ||||| |||||||||| ||||| ||||||||| ||| |||||||||||| |||| | ||||| ||| ||| | |
|
|
| T |
10328940 |
tgagcagagcactttgcatgtgatccttccttcactataaaatttgcacacatattttgttccctaagaacatgcaccaatgttgtgttcccatttccat |
10329039 |
T |
|
| Q |
447 |
gtaaaacatctctaatacgaagaatgtttggtagc----ataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaatta |
542 |
Q |
| |
|
||||| |||||||||| ||| |||| | |||| |||||||||||| ||||| |||||||||| ||||||||| | || | |||| | |||| | |
|
|
| T |
10329040 |
gtaaagcatctctaatgtgaaaaatg-tcaatagcatatataagtgtgcaaggtatgatcacgaccatcaataatcaggtcaactccttcctaacaatca |
10329138 |
T |
|
| Q |
543 |
ctctcacaaataatgttg |
560 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
10329139 |
ctctcacaaaaaatgttg |
10329156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 338 - 556
Target Start/End: Original strand, 27046116 - 27046332
Alignment:
| Q |
338 |
cagtttcaatgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgt |
437 |
Q |
| |
|
||||| || |||||| ||||| ||||| ||||| | |||||| | ||||| ||| | | ||||||| |||||||||||||||| |||| | || || | |
|
|
| T |
27046116 |
cagttccagtgagcagagcaccttgcatgtgatccttccttagtcacaaaatttgcccacgtattttgttccataagaacatgcaccaatgttgtatttt |
27046215 |
T |
|
| Q |
438 |
catctccgtgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagc |
537 |
Q |
| |
|
||| ||| |||||||||||||||||| |||| ||| ||||||||||||||| || ||||| ||||| ||| |||||||| | || || |||||| | |
|
|
| T |
27046216 |
catttccatgtaaaacatctctaatatgaaggatg-acggtagcataagtgtgtaaggtatgatcacg-ccaacaataatcaagtcaactgcttccaatc |
27046313 |
T |
|
| Q |
538 |
aattactctcacaaataat |
556 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
27046314 |
gatcactctcacaaataat |
27046332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 560
Target Start/End: Original strand, 5464520 - 5464744
Alignment:
| Q |
335 |
gggcagtttcaatgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgt |
434 |
Q |
| |
|
||||||||||| ||| || ||||| ||||| ||||| | |||||| | ||||||| ||||| ||||||| ||| ||||| ||||| |||| | | | |
|
|
| T |
5464520 |
gggcagtttcagtgaccaaagcaccttgcatgtgatccttccttagccataaaatctgcacatgtattttgttccccaagaatatgcaccaatgttctat |
5464619 |
T |
|
| Q |
435 |
tgtcatctccgtgtaaaacatctctaatacgaagaatgtttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattcca |
534 |
Q |
| |
|
| ||| ||| |||||||||||||||||| |||| ||| | ||||||||||||||||| ||||| ||| | || |||||| || | || || ||||| |
|
|
| T |
5464620 |
ttccatttccatgtaaaacatctctaatatgaaggatg-ctagtagcataagtgtgcaaggtatgatcaaaatcaacaataataaggtcaactgcttcca |
5464718 |
T |
|
| Q |
535 |
agcaattactctcacaaataatgttg |
560 |
Q |
| |
|
| ||| ||||| ||||||||||||| |
|
|
| T |
5464719 |
aacaaccactctaacaaataatgttg |
5464744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 374 - 564
Target Start/End: Original strand, 12291789 - 12291978
Alignment:
| Q |
374 |
tccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgtgtaaaacatctctaatacgaagaatgt |
473 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| || ||||||||| || |||| ||| ||| ||| | | |||||||||||||||||| |||| || | |
|
|
| T |
12291789 |
tccttaactataaaacctgcacacatattttgttctctaagaacatacaccaatgtagcattgccattttcatgtaaaacatctctaatatgaaggatct |
12291888 |
T |
|
| Q |
474 |
ttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcat |
564 |
Q |
| |
|
| |||||||||||||||||| ||| ||||| ||| |||||||||| || || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12291889 |
c-gctagcataagtgtgcaatgcatgatcacggccaacgataatcagctcaactgcttccaagcaatcactctcacaaataatgttgtcat |
12291978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 478 - 698
Target Start/End: Original strand, 12292041 - 12292257
Alignment:
| Q |
478 |
tagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcatggccnnnnnnnnn |
577 |
Q |
| |
|
|||||||||||||||||| ||| ||||| ||| ||||||||||| || || ||||||||||| |||||||||||||||||| |||| ||| |
|
|
| T |
12292041 |
tagcataagtgtgcaatgcatgatcacggccaacaataatcagctcaactgcttccaagcaatcactctcacaaataatgttatcatagcctttttttga |
12292140 |
T |
|
| Q |
578 |
atttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatc |
677 |
Q |
| |
|
| |||||||||||| || |||| ||||| | ||||||||| ||||||| |||||| | ||| ||||| ||||||||||||| |||| ||||| |||| |
|
|
| T |
12292141 |
a---acaaaaatcaagccctatctggatagtacgcaactcagttaataacacatcacctccaaattcatggtgagaaaaatcaaatatctaatctccatc |
12292237 |
T |
|
| Q |
678 |
gtggttgcgaacaacaccacc |
698 |
Q |
| |
|
| ||||| ||||||| |||| |
|
|
| T |
12292238 |
-ttgttgcaaacaacatcacc |
12292257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 2e-24; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 580 - 702
Target Start/End: Complemental strand, 29047175 - 29047053
Alignment:
| Q |
580 |
ttacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgt |
679 |
Q |
| |
|
||||||||||||||||| ||| | ||||| | |||||||||||||||||||||| | || |||||||||||||||| || ||| |||||| |||||| |
|
|
| T |
29047175 |
ttacaaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagattcatagtgagaaaaactagctattcaatctccatcgt |
29047076 |
T |
|
| Q |
680 |
ggttgcgaacaacaccaccaaca |
702 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
29047075 |
ggttgcaaacaacaccaccaaca |
29047053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 347 - 559
Target Start/End: Complemental strand, 2443471 - 2443255
Alignment:
| Q |
347 |
tgagcatagcacattgcacgtgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaatatagtgttgtcatctccgt |
446 |
Q |
| |
|
|||||| ||||||||||||||||| | |||||| | ||||||||| || ||||||||| ||| || |||||||||| ||| | || || ||| | | | |
|
|
| T |
2443471 |
tgagcagagcacattgcacgtgatccttccttagccataaaatatacatacatattttgttccctatgaacatgcattaatgttgtattaccattttcat |
2443372 |
T |
|
| Q |
447 |
gtaaaacatctctaatacgaagaatgt----ttggtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaatta |
542 |
Q |
| |
|
||||||||||||||||| |||| |||| | |||||||| |||||||| ||||| |||||||||| |||||||| | || || |||||| |||| | |
|
|
| T |
2443371 |
gtaaaacatctctaatatgaaggatgtcatgtcagtagcatatgtgtgcaaggtatgatcacgaccatcaataatcaagtcaactgcttccaaacaatca |
2443272 |
T |
|
| Q |
543 |
ctctcacaaataatgtt |
559 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2443271 |
ttctcacaaataatgtt |
2443255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 581 - 703
Target Start/End: Complemental strand, 2442384 - 2442262
Alignment:
| Q |
581 |
tacaaaaatcaagacccatctagatagcatgcaactcagctaataacgcatcacgttcaacttcatagtgagaaaaatcagttatccaatcttcatcgtg |
680 |
Q |
| |
|
|||||||||||| ||| || | |||| || | |||||||||||||||||||||| | |||||||||||||||||||| || |||||| ||| ||| ||| |
|
|
| T |
2442384 |
tacaaaaatcaacacctatttggataacacgtaactcagctaataacgcatcacctccaacttcatagtgagaaaaactagctatccagtctccattgtg |
2442285 |
T |
|
| Q |
681 |
gttgcgaacaacaccaccaacac |
703 |
Q |
| |
|
|||| | |||||||||||||||| |
|
|
| T |
2442284 |
gttgtggacaacaccaccaacac |
2442262 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 556
Target Start/End: Original strand, 10992968 - 10993047
Alignment:
| Q |
477 |
gtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataat |
556 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| || |||||||| | || || || ||| |||| ||||||||||||||| |
|
|
| T |
10992968 |
gtagcataagtgtgcaaggtatgatcacgactatccataatcaggtcaactgctttcaaacaatcactctcacaaataat |
10993047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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