View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9829_low_10 (Length: 376)
Name: NF9829_low_10
Description: NF9829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9829_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 10310318 - 10310513
Alignment:
| Q |
1 |
agtcctacctgatccattgtgcaacacttcctgatcaatggtccaacatgtaaagtttcatcaagttgttctttaaggttcttcaggccctgttctgttt |
100 |
Q |
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| T |
10310318 |
agtcctacctgatccattgtgcaacacttcctgatcaatggtccaacatgtaaagtttcatcaagttgttctttaaggttcttcaggccctgttctgttt |
10310417 |
T |
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| Q |
101 |
ttgacagtccttcagaatcctatagcataaattcaaagacaaataaatacataaaactcccaaagagttcaaacacgcaagcattttggtaagctc |
196 |
Q |
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| T |
10310418 |
ttgacagtccttcggaatcctatagcataaattcaaagacaaataaatacataaaactcccaaagagttcaaacacgcaagcattttggtaagctc |
10310513 |
T |
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Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 286 - 360
Target Start/End: Original strand, 10310603 - 10310677
Alignment:
| Q |
286 |
ataattaatgatgttaaaacggtaggctagtacctcattgacagaaactggagtgatggaccttatgtgtgatga |
360 |
Q |
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| T |
10310603 |
ataattaatgatgttaaaacggtaggctagtacctcattgacagaaactggagtgatggaccttatgtgagatga |
10310677 |
T |
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