View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9829_low_11 (Length: 371)
Name: NF9829_low_11
Description: NF9829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9829_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 23 - 361
Target Start/End: Complemental strand, 43339751 - 43339413
Alignment:
| Q |
23 |
tggcagcctgctccaaatctgcgaagctgctgccacaataatcttcatcatattcagcatcacggaacaaatttgacagcaccaaatagaannnnnnnnc |
122 |
Q |
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| T |
43339751 |
tggcagcctgctccaaatctgcgaagctgctgccacaataatcttcatcatattcagcatcacggaacaaatttgacagcaccaaatagaattttttttc |
43339652 |
T |
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| Q |
123 |
accaagaaccctgctccttcgtcgggcagccagcagaaggtatcagaaacagatggtcgcggctgcacctgcagaatttcctactgcaaaacagatggtc |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43339651 |
accaagaaccctgctccttcgtcgggcagccagcagaaggtatcagaaacagatggtcgcggctgcacctgcagaatttcctactgcaaaacagatggtc |
43339552 |
T |
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| Q |
223 |
cggttgcaaatttttggaccaattccatctccaaatccacatattatctcaccaacatcccatgtcggacaccttaacatctctgttagaaaccgcactg |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43339551 |
cggttgcaaatttttggaccaattccatctccaaatccacatattatctcaccaacatcccatgtcggacaccttaacatctctgttagaaaccgcactg |
43339452 |
T |
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| Q |
323 |
aataaatgagggaatcacacacagaatggttgttctctg |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
43339451 |
aataaatgagggaatcacacacagaatggttgttctctg |
43339413 |
T |
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