View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9829_low_15 (Length: 317)
Name: NF9829_low_15
Description: NF9829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9829_low_15 |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: scaffold0268 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 300
Target Start/End: Complemental strand, 23217 - 22929
Alignment:
| Q |
12 |
acatcataaaccttttcacaaccaagctcacccaataatctatcagcaacaaactcaatataagtactcatcaatccaccgttcatcccaaccaacgcgc |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23217 |
acattataaaccttttcacaaccaagctcacccaataatctatcagcaacaaactcaatataagtactcatcaatccaccattcatcccaaccaacgcgc |
23118 |
T |
|
| Q |
112 |
aaggaagcgcgttgcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttctttcgtagaagtgagta |
211 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23117 |
aaggaagtgctttgcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttcttttgtagaagtgagta |
23018 |
T |
|
| Q |
212 |
taacaaacaagcaaaatcacagtgtagaccttcatcgcgtgaaataagctcgtttgagaaggttaatcccggcattaaaccgcgttttt |
300 |
Q |
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|||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||| || |||||||||||||| |||| |
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| T |
23017 |
taacaaacaagcaaaatcacagtgcagaccttcgtcacgtgaaataagctcgtttgagaatgttaaccctggcattaaaccgcgctttt |
22929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 300
Target Start/End: Original strand, 10196871 - 10197159
Alignment:
| Q |
12 |
acatcataaaccttttcacaaccaagctcacccaataatctatcagcaacaaactcaatataagtactcatcaatccaccgttcatcccaaccaacgcgc |
111 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10196871 |
acattataaaccttttcacaaccaagatcacccaataatctatcagcaacaaactcaatataagtactcatcaatccaccattcatcccaaccaacgcgc |
10196970 |
T |
|
| Q |
112 |
aaggaagcgcgttgcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttctttcgtagaagtgagta |
211 |
Q |
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||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10196971 |
aaggaagagcatagcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttctttagtagaagtgagta |
10197070 |
T |
|
| Q |
212 |
taacaaacaagcaaaatcacagtgtagaccttcatcgcgtgaaataagctcgtttgagaaggttaatcccggcattaaaccgcgttttt |
300 |
Q |
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|||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||| || |||||||||||||| |||| |
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| T |
10197071 |
taacaaacaagcaaaatcacagtgcagaccttcgtcacgtgaaataagctcgtttgagaatgttaaccctggcattaaaccgcgctttt |
10197159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 19457722 - 19457440
Alignment:
| Q |
18 |
taaaccttttcacaaccaagctcacccaataatctatcagcaacaaactcaatataagtactcatcaatccaccgttcatcccaaccaacgcgcaaggaa |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||| |
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| T |
19457722 |
taaaccttttcacaaccaagctcacccaataacctatcagcaacaaactcaatatacgtactcatcaaacccccattcatcccaaccaacgcgcaaggaa |
19457623 |
T |
|
| Q |
118 |
gcgcgttgcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttctttcgtagaagtgagtataacaa |
217 |
Q |
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|||||| ||| ||||| || | ||||||||||||||||| || |||||||| ||||| ||||||||| |||| |||||||||||||||||||||||||| |
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| T |
19457622 |
gcgcgtggcacacaaactccctttcaatttcaacagcatcacaaacaatttctttcacgcgctctgaacttagcttctttcgtagaagtgagtataacaa |
19457523 |
T |
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| Q |
218 |
acaagcaaaatcacagtgtagaccttcatcgcgtgaaataagctcgtttgagaaggttaatcccggcattaaaccgcgttttt |
300 |
Q |
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|||||| ||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19457522 |
acaagcgaaatcacagtgcaatccttcgtcgcgtgaaataagctcgtttgagaaggttaatcccggcattaaaccgcgctttt |
19457440 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 12 - 300
Target Start/End: Original strand, 25025363 - 25025651
Alignment:
| Q |
12 |
acatcataaaccttttcacaaccaagctcacccaataatctatcagcaacaaactcaatataagtactcatcaatccaccgttcatcccaaccaacgcgc |
111 |
Q |
| |
|
|||| |||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
25025363 |
acattataaactttctcacaaccaagctcacccaataacctatcagcaacaaactcaatatactgactcatcaattcaccgttcatcccaaccaacgcgc |
25025462 |
T |
|
| Q |
112 |
aaggaagcgcgttgcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttctttcgtagaagtgagta |
211 |
Q |
| |
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|||||||||||| ||| ||||| || | |||||| ||||| |||| | ||||| | | ||| ||||||| | | ||||||| || | || ||||| |
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| T |
25025463 |
aaggaagcgcgtcgcatacaaactccctttcaatctcaaccgcatcacgaacaatcttcaccacgcgctctgtactcagtttctgacgcaatagcgagta |
25025562 |
T |
|
| Q |
212 |
taacaaacaagcaaaatcacagtgtagaccttcatcgcgtgaaataagctcgtttgagaaggttaatcccggcattaaaccgcgttttt |
300 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25025563 |
taacaaacaagcaaaatcacagtgtaagccttcgtcgcgtgaaataagctcgtttgagaaagttaatcccggcattaaaccgcgttttt |
25025651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 42307899 - 42307838
Alignment:
| Q |
12 |
acatcataaaccttttcacaaccaagctcacccaataatctatcagcaacaaactcaatata |
73 |
Q |
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|||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42307899 |
acattataaaccttctcacaaccaagctcacccaataacctatcagcaacaaactcaatata |
42307838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 682779 - 682675
Alignment:
| Q |
12 |
acatcataaaccttttcacaaccaagctcacccaataatctatcagcaacaaactcaatataagtactcatcaatccaccgttcatcccaaccaacgcgc |
111 |
Q |
| |
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|||| ||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
682779 |
acattataaaccttctcacaaccaagctcatccaataacctatcagcaacaaactcaatatactaactcatcaattcaccgttcatcccaaccaacgcgc |
682680 |
T |
|
| Q |
112 |
aagga |
116 |
Q |
| |
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||||| |
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| T |
682679 |
aagga |
682675 |
T |
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