View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9829_low_16 (Length: 302)
Name: NF9829_low_16
Description: NF9829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9829_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 286
Target Start/End: Original strand, 30991853 - 30992122
Alignment:
| Q |
15 |
gatcaaatgattaaaggacacatttatctaactatgtaccactgtatgacaccatgttggttaaagatgacaacaatattttgtctaagttaaatgaaga |
114 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30991853 |
gatcaaatgattaaaggacgcatttatctacctatgtaccactgtatgacaccatgttggttaaagatgacaacaatattttgtctaagttaaatgaaga |
30991952 |
T |
|
| Q |
115 |
tattattcagataatcatcatagctatcttctctaacaaattcaatgatacctttctgaactccttcatacaaatatgaagttttttggaagacttgcaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30991953 |
tattattcagataatcatcatagctatcttctctaacaaattcaatgatacctttctgaactc---catacaaatatgaagttttttggaagacttgcaa |
30992049 |
T |
|
| Q |
215 |
ctca--gatactcactaggtagaaatattattaaagtgaaagatctagtacaaacacttatcaggcatcatttt |
286 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30992050 |
ctcattgatactcactaggtag-aatattattaaagtgaaagatctagtacaaacacttattaggcatcatttt |
30992122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University