View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9829_low_17 (Length: 298)
Name: NF9829_low_17
Description: NF9829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9829_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 288
Target Start/End: Original strand, 38866208 - 38866481
Alignment:
| Q |
15 |
accatctccacttgcaccactctccgccatcttgatctctccctcaacctcttcgccggcaatatccctcacactctctccgacctccctctccaagaac |
114 |
Q |
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| T |
38866208 |
accatctccacttgcaccactctccgccatcttgatctctccctcaacctcttcgccggcaatatccctcacactctctccgacctccctctccaagaac |
38866307 |
T |
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| Q |
115 |
tcaacctctccttcaacaacttctccggcaacatcccacaaaccttcagcaacttccaacaactccaaacaatctctctcgttaacaacctcttgactgg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38866308 |
tcaacctctccttcaacaacttctccggcaacatcccacaaaccttcagcaacttccaacaactccaaacaatctctctcgttaacaacctctttactgg |
38866407 |
T |
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| Q |
215 |
aacaataccttcttctctaagcaatgtttcttctctcaaacatcttcatcttgcttacaacaacttcctctctg |
288 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38866408 |
aacaataccttcctctctaagcaatgtttcttctctcaaacatcttcatcttgcttacaacaacttcctctctg |
38866481 |
T |
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