View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9829_low_18 (Length: 281)
Name: NF9829_low_18
Description: NF9829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9829_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 28894420 - 28894157
Alignment:
| Q |
1 |
ttgacttcaaaacattataaactatataccaatttttgtgtggcttgatcatcctttgtgtaggttattagcaacattgtggaaccggcactgctttctg |
100 |
Q |
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| T |
28894420 |
ttgacttcaaaacattataaactatataccaatttttgtgtggcttgatcatcctttgtgtaggttattagcaacattgtggaaccggcactgctttctg |
28894321 |
T |
|
| Q |
101 |
aacatgggcatgatttagataaacctgtttctcaagagatatttttggaggaatttaagaaagttgcattgagcgtggcgaatcgccttaaggagcaacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28894320 |
aacatgggcatgatttagataaacctgtttctcaagagatatttttggaggaatttaagaaagtagcattgagcgtggcgaatcgccttaaggagcaacc |
28894221 |
T |
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| Q |
201 |
tgttatagttgctcatagtgaaagcacctttgatggaaatggtgttaaaagactattatccaac |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28894220 |
tgttatagttgctcatagtgaaagcacctttgatggaaatggtgttaaaagactattatccaac |
28894157 |
T |
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