View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9829_low_21 (Length: 253)
Name: NF9829_low_21
Description: NF9829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9829_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 6 - 238
Target Start/End: Original strand, 45872548 - 45872779
Alignment:
| Q |
6 |
agaagaatgcaaacaattataaccaattattacaaggtaggttaaaagtctacacccaaacagactaaggattacgccaccacatacgataatcgaaagc |
105 |
Q |
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| T |
45872548 |
agaagaatgcaaacaattataaccaattattacaaggtaggctaaaagtctacacccaaacagactaaggattaagccaccacatacgataatcgaaagc |
45872647 |
T |
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| Q |
106 |
aaaagtaacattgattgcttttaaccnnnnnnnngagagcagcttgattatatatgtcagttgttgaaaaaatttcctctatagacttaaaattcctact |
205 |
Q |
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| T |
45872648 |
aaaagtaacattgattgcttttaaccgaaaaaaagagagcagcttaattctatatgtcagttgttgtaaaaa-ttcctctatagacttaaaatttctatt |
45872746 |
T |
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| Q |
206 |
atttctttctttctaaatcacccacaaacaagc |
238 |
Q |
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| T |
45872747 |
atttctttctttctaaatcacccaaaaacaagc |
45872779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 39297303 - 39297369
Alignment:
| Q |
48 |
taaaagtctacacccaaacagactaa-ggattacgccaccacatacgataatcgaaagcaaaagtaa |
113 |
Q |
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|||||||||| ||||||||| |||| |||||| ||||||||||| ||||||| ||||||||||||| |
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| T |
39297303 |
taaaagtctaaacccaaacatactagtggattaagccaccacatatgataatcaaaagcaaaagtaa |
39297369 |
T |
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