View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9829_low_27 (Length: 238)
Name: NF9829_low_27
Description: NF9829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9829_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38315292 - 38315514
Alignment:
| Q |
1 |
agattcttgttcttgcatttgcttttgggttccatctttgattttccagatttctttataattaagttccatctttgtcattcaagaatacaattacaag |
100 |
Q |
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| T |
38315292 |
agattcttgttcttgcatttgcttttgggttccatctttgattttccagatttctttataattaagttccatctttgtcattcaagaatacaattacaag |
38315391 |
T |
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| Q |
101 |
tttatttttggttgcaagtctaaactttaaagaattttaaccacctgtttgtggtgttgacttctctgacagtaatagttttagttatatttcctgcacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38315392 |
tttatttttggttgcaagtctaaactttaaagaattttaaccacctgtttgtggtgttgacttctctgacagtaatagttttagtaatatttcctgcacc |
38315491 |
T |
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| Q |
201 |
ctgttctatcttattgtttgttt |
223 |
Q |
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| T |
38315492 |
ctgttctatcttattgtttgttt |
38315514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 38848694 - 38848601
Alignment:
| Q |
4 |
ttcttgttcttgcatttgcttttgggttccatcttt-gattttccagatttctttataattaagttccatctttgtcattcaagaatacaatta |
96 |
Q |
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| T |
38848694 |
ttctagttcttgcatttggttttgggttctatcttttgattcttcaatttttgttgttgttaagttccatctttgtcattcaagaatacaatta |
38848601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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