View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9829_low_3 (Length: 620)
Name: NF9829_low_3
Description: NF9829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9829_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 584; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 18 - 609
Target Start/End: Complemental strand, 47061187 - 47060596
Alignment:
| Q |
18 |
tgaaggaatctttattaaggccacagacacagaggaagaagaatcattttgaaacttgccgtgtataagtggaagcctatatttattgcagctgccgttg |
117 |
Q |
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| T |
47061187 |
tgaaggaatctttattaaggccacagacacagtggaagaagaatcattttgaaacttgccgtgtataagtggaagcctatatttattgcagctgccgttg |
47061088 |
T |
|
| Q |
118 |
gtgtatattgctcccccacaaacacaatcttgtcggcaagccttctcacaagtatccatatcaatcaacacgggtataacagaatatggaacatcccccc |
217 |
Q |
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| T |
47061087 |
gtatatattgctcccccacaaacacaatcttgtcggcaagccttctcacaagtatccatatcaatcaacacgggtataacagaatatggaacatcccccc |
47060988 |
T |
|
| Q |
218 |
aatgcatattctcaaagtgagtaaaattatacaacaacgttcggtcttcaatgctttcacagtcatctttgctatgcgtctgtacgcagtctataggcac |
317 |
Q |
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| T |
47060987 |
aatgcatattctcaaagtgagtaaaattatacaacaacgttcggtcttcaatgctttcacagtcatctttgctatgcgtctgtacgcagtctataggcac |
47060888 |
T |
|
| Q |
318 |
gcttttagtgttggaagggatgaaaccaggataacatttgcatacagcatcaccgctcatattgaaggagcaataactgttcaacccacaaaaccccttc |
417 |
Q |
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| T |
47060887 |
gcttttagtgttggaagggatgaaaccaggataacatttgcatacagcatcaccgctcatattgaaggagcaataactgttcaacccacaaaaccccttc |
47060788 |
T |
|
| Q |
418 |
acttgacaagtgtcattaagtgcttgccacaagattaccacacgcgagctattcttgctctcaaagtcaaattggtgctcatacaatctcaagtttccat |
517 |
Q |
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| T |
47060787 |
acttgacaagtgtcattaagtgcttgccacaagattaccacacgcgagctattcttgctctcaaagtcaaattggtgctcatacaatctcaagtttccat |
47060688 |
T |
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| Q |
518 |
ctacatcaaacgttgcacggtagattgaagttgtgttgttgtgtaacttcttactatgcttattgatatcgttgagacatagcctatcacca |
609 |
Q |
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| T |
47060687 |
ctacatcaaacgttgcacggtagattgaagttgtgttgttgtgtaacttcttactatgcttattgatatcgttgagacatagcctatcacca |
47060596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 597
Target Start/End: Original strand, 47080575 - 47081146
Alignment:
| Q |
23 |
gaatctttattaaggccacagacacagaggaagaagaatcattttgaaacttgccgtgtataagtggaagcctatatttattgcagctgccgttggtgta |
122 |
Q |
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||||||||| || |||||||||||| | ||||||| |||||||||| | |||| | ||||||||||||||||||||||||||||| ||| || || |
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| T |
47080575 |
gaatctttaatagggccacagacacggtggaagaa---tcattttgaaccctgccataaataagtggaagcctatatttattgcagctagtgtttgtata |
47080671 |
T |
|
| Q |
123 |
tattgctcccccacaaacacaatcttgtcggcaagccttctcacaagtatccatatcaatcaacacgggtataacagaatatggaacatccccccaatgc |
222 |
Q |
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| T |
47080672 |
tattgctcccccgcaaacacaatcttcttggcaagcctgctcacaagttttcatgt---tcatcacaggtataacagaatatggaatatcaccccaagac |
47080768 |
T |
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| Q |
223 |
atattctcaaagtgagtaaaattatacaacaacgttcggtcttcaatgctttcacagtcatctttgctatgcgtctgtacgcagtctataggcacg---- |
318 |
Q |
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||||||| ||||| |||| ||||||| ||| ||| | |||| ||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
47080769 |
atattcttaaagttagtataattatataacgccgtgc---cttcgctgctttcacagtcatctttgctatgtttctgtacgcagtccataggcaatttag |
47080865 |
T |
|
| Q |
319 |
-----cttttagtgttggaagggatgaaaccaggataacatttgcatacagcatcaccgctcatattgaaggagcaataactgttcaacccacaaaaccc |
413 |
Q |
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||||| || | |||| ||||||||||||||||||| ||||| |||||||||| ||| || ||| | | ||||||||||||||||||||||||||| |
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| T |
47080866 |
gattacttttggtctcggaaaggatgaaaccaggataacacttgcagacagcatcactgctgatgttggaagtgcaataactgttcaacccacaaaaccc |
47080965 |
T |
|
| Q |
414 |
cttcacttgacaagtgtcattaagtgcttgccacaagattaccacacgcgagctattcttgctctcaaagtcaaattggtgctcatacaatctcaagttt |
513 |
Q |
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||||||| ||| || ||||||||||||| |||||| ||||||||||| |||||||| |||| ||||| | ||||||||| |||||||||||||||||| |
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| T |
47080966 |
cttcactaaacatgtctcattaagtgctttccacaacattaccacacgagagctattgttgccttcaaaatgaaattggtgttcatacaatctcaagttt |
47081065 |
T |
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| Q |
514 |
ccatctacatcaaacgttgcacggtagattgaagttgtgttgttgtgtaacttcttactatgcttattgatatcgttgagacat |
597 |
Q |
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|||||||| |||| |||||||||||||||||||||| |||||| | ||||||| ||| |||||||| ||| ||||| |||| |
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| T |
47081066 |
ccatctacgtcaagtgttgcacggtagattgaagttgcgttgtt---tgacttctttctaggcttattggtatggttgaaacat |
47081146 |
T |
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