View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9829_low_4 (Length: 596)
Name: NF9829_low_4
Description: NF9829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9829_low_4 |
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| [»] scaffold0010 (2 HSPs) |
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Alignment Details
Target: scaffold0010 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 136 - 580
Target Start/End: Original strand, 252285 - 252731
Alignment:
| Q |
136 |
caggttcctttcaaaagta---aagtgtgaaaagacaaaagtttttaactggaaacataaattgctaaatgtttaaagaaaatttaaagacattgaaggt |
232 |
Q |
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| T |
252285 |
caggttcctttcaaaagtagtaaagtgtgaaaagacaaaagtttttaactggaaacataaattgctaaatgtttaaagaaaatttaaagacattgaaggt |
252384 |
T |
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| Q |
233 |
atacttaaattctaatagcttgaatcatttttcaatttaagaacaagcttcagaacgtaagtattcgatctcgtttacatcatttgaggtaatattatag |
332 |
Q |
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| T |
252385 |
atacttaaattctaatagcttgaatcatttttcaatttaagaacaagcttcagaacgtaagtatccgatctcgtttacatcatttgaggtaatattatag |
252484 |
T |
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| Q |
333 |
agaaaatacattaggtaattgttcactacgggcaaagccacgtatgtggaagtaaatcttactaaattaatctatgattttgacataattatgaaatgtc |
432 |
Q |
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| T |
252485 |
agaaaatacattaggtaattgttcattacgggcaaagccacgtatctggaagtaaatcttactaaattaatctatgattttgacataattatgaaatgtt |
252584 |
T |
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| Q |
433 |
gagctatactttaaaattcaccattagcagaaatacaagaaaataaagaagaaattgattgtgttcatatggctcttggaggtttttcgagcaacgcaga |
532 |
Q |
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| T |
252585 |
gagctatac-ttaaaattcaccattagcagaaatacaagaaaataaagaagaaattgattgtgttcatatggctcttggaggtttttcgagcaacgcaga |
252683 |
T |
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| Q |
533 |
gagatatatttcatcctttgactttggagaaataacccacttgtgttt |
580 |
Q |
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| T |
252684 |
gagatatatttcatcctttgactttggagaaataacccacttgtgttt |
252731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 252094 - 252217
Alignment:
| Q |
1 |
ggagaatagtgagagctatgaggaaaaatgtgattctgaatggaactggtatgcgcccgtatcaatgacttctagactttacgacagtgaatcgtggtta |
100 |
Q |
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| T |
252094 |
ggagaatagtgagagctatgaggaaaaatgtgattctgaatggaactggtatgcgcccgtatcaacgacttctagactttacgacagtgaatcgtggtta |
252193 |
T |
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| Q |
101 |
gaagtctcttctcgatttttcttt |
124 |
Q |
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| T |
252194 |
gaagtctcttctcgatttttcttt |
252217 |
T |
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