View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9829_low_5 (Length: 577)
Name: NF9829_low_5
Description: NF9829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9829_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 517; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 18 - 567
Target Start/End: Complemental strand, 41218995 - 41218446
Alignment:
| Q |
18 |
acatagagccacacactggacagaaattccgttctttggtatctgttcacagatatctaaatggaggagaaacaagagactatctttctactgagagaat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41218995 |
acatagagccacacactggacagaaattccgttctttggtatctgttcacagatatctaaatggaggagaaacaaaagactatctttctactgagagaat |
41218896 |
T |
|
| Q |
118 |
gatatcagaaaacaagaacactgtgagttcaatttcatgtttacgtcagtttctagtatgtctctttagtcagtagcaagaggaacatagtggtatatnn |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41218895 |
gatatcagaaaacaagaacactgtgagttcaatttcatgtttacgtcagtttctagtatgtctctttagtcagtagcaagaggaacatagtggtatataa |
41218796 |
T |
|
| Q |
218 |
nnnnnggataaatttgctttataagattctaggatgctaatagtttttcctaatcattcaactgtttctttacaataagccaaatataaattgtttttct |
317 |
Q |
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| T |
41218795 |
aaaaaggataaatttggtttataagattctaggatgctaatagtttttcttaatcattcaactgtttctttacaataagccaaatataaattgtttttct |
41218696 |
T |
|
| Q |
318 |
gctagatcatgttatcgtgcagtgttttctttagtatatatatgatggaaattgcattcattcttgatatgaattaatgaaattatcactgcaaaagtaa |
417 |
Q |
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| T |
41218695 |
gctagatcatgttatcgtgcagtgttttctttagtatatatatgatggaaattgcattcattcttgatatgaattaatgaaattatcactgcaaaagtaa |
41218596 |
T |
|
| Q |
418 |
ataacaaaagtcaattagaaactactgtctgagattctgttacttcgactcatagttatacttgttactagagatgaaaaataggactcccatttatgct |
517 |
Q |
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| T |
41218595 |
ataacaaaagtcaattagaaactactgtctgagattctgttacttcgactcatagttatacttgttactagagatgaaaaataggactcccatttatgct |
41218496 |
T |
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| Q |
518 |
ataagctagcttattaatggctaggctttagaagttctctactttctctg |
567 |
Q |
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| T |
41218495 |
ataagctagcttattaatggctaggctttagaagttctctactttctctg |
41218446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 41224581 - 41224398
Alignment:
| Q |
18 |
acatagagccacacactggacagaaattccgttctttggtatctgttcacagatatctaaatggaggagaaacaagagactatctttctactgagagaat |
117 |
Q |
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|||||||||||| |||||||||||| |||||||||||| ||||||||| |||||||| ||| | |||| |||||||||||||| ||||||| ||||| |
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| T |
41224581 |
acatagagccacgcactggacagaagttccgttctttgacatctgttcagagatatct-tatg--gcagaagcaagagactatcttcctactgaaagaat |
41224485 |
T |
|
| Q |
118 |
gatatcagaaaacaagaacactgtgagt-tcaatttcatgtttacgtcagtttctagtatgtctctttagtcagtagcaagaggaacatagtgg |
210 |
Q |
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| T |
41224484 |
gatatcagaa------aacgctgtgagtaacaatttcatg-ttacatcagtttctagtatgtctcttttgtcagtagccagagaaacacagtgg |
41224398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 41226154 - 41226040
Alignment:
| Q |
18 |
acatagagccacacactggacagaaattccgttctttggtatctgttcacagatatctaaatggaggagaaacaagagactatctttctactgagagaat |
117 |
Q |
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|||||||||||||||| ||||| || ||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||| | ||||| |
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| T |
41226154 |
acatagagccacacaccggacaaaagttccgatctttggtatcggttcagcgatatctaaatggaggagaaacaggagactatcttcctactcaaagaat |
41226055 |
T |
|
| Q |
118 |
gatatcagaaaacaa |
132 |
Q |
| |
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| T |
41226054 |
catatcagaaaacaa |
41226040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 223 - 395
Target Start/End: Complemental strand, 41224327 - 41224157
Alignment:
| Q |
223 |
ggataaatttgctttataagattctaggatgc-taatagtttttcctaatcattcaactgtttctttacaataagccaaatataaattgtttttctgcta |
321 |
Q |
| |
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||||||||||| ||||||||||| || || || ||| |||||||| || | ||||| ||||||| || |||||||||||||||| |||| ||| |||| |
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| T |
41224327 |
ggataaatttggtttataagattgtatgaagcataaaagtttttcttacttattcagctgtttccttgcaataagccaaatatatattg-tttgctgcat |
41224229 |
T |
|
| Q |
322 |
gatcatgttatcgtgcagtgttttctttagtatatatatgatggaaattgcattcattcttgatatgaattaat |
395 |
Q |
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|| | ||||| ||| || ||| ||| || | ||||||||||||||| ||||||||||||||||||| |||| |
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| T |
41224228 |
tattaggttatggtgttgtttttgcttcag--tgtatatgatggaaattacattcattcttgatatgaaataat |
41224157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 529
Target Start/End: Complemental strand, 41224069 - 41224023
Alignment:
| Q |
483 |
tactagagatgaaaaataggactcccatttatgctataagctagctt |
529 |
Q |
| |
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||||||| ||||||||| ||| ||||||||||||||||||||||||| |
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| T |
41224069 |
tactagaaatgaaaaatgggattcccatttatgctataagctagctt |
41224023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 1596847 - 1596993
Alignment:
| Q |
21 |
tagagccacacactggacagaaattccgttctttggtatctgttcacagatatctaaatggaggagaaacaagagactatctttctactgagagaatgat |
120 |
Q |
| |
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||||||| | ||||||||| || ||||||||||||| |||||| || ||||||||||||| || ||||||||||||| ||| ||||||| |||||||| |
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| T |
1596847 |
tagagccgcgcactggacataagttccgttctttggcatctgtccagagatatctaaatgcag---aaacaagagactaccttcctactgacagaatgat |
1596943 |
T |
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| Q |
121 |
atcagaaaacaagaacactgtgagttc-aatttcatgtttacgtcagttt |
169 |
Q |
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| T |
1596944 |
atcagaaaacaaaaacactgtgagttctaatttcatgtttagatcagttt |
1596993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 1597643 - 1597799
Alignment:
| Q |
18 |
acatagagccacacactggacagaaattccgttctttggtatctgttcacagatatctaaatggaggagaaacaagagactatctttctactgagagaat |
117 |
Q |
| |
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|||||||||||||||| |||||||| |||||||| ||||||||||| | |||||||| || || ||||||||||||||||| ||||||| ||| | |
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| T |
1597643 |
acatagagccacacacaggacagaagttccgttcattggtatctgtgaaaagatatctcaacaaag---aaacaagagactatcttcctactgacagagt |
1597739 |
T |
|
| Q |
118 |
gatatcagaaaacaagaacactgtgagttc-aatttcatgtttacgtcagtttctagtat |
176 |
Q |
| |
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||||||||||||||| |||| |||||||| ||||||||||| || |||||||||||||| |
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| T |
1597740 |
gatatcagaaaacaaagacaccgtgagttctaatttcatgttcacatcagtttctagtat |
1597799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 85 - 210
Target Start/End: Original strand, 554881 - 555005
Alignment:
| Q |
85 |
agaaacaagagactatctttctactgagagaatgatatcagaaaacaagaacactgtgagtt-caatttcatgtttacgtcagtttctagtatgtctctt |
183 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||| |||||||||||| ||||||||||||||||||||| |
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| T |
554881 |
agaaacaagagactatcttcctactgagagaatgatatcagaaaacaaaaaca--ttgagttataatttcatgtttgtatcagtttctagtatgtctctt |
554978 |
T |
|
| Q |
184 |
tagtcagtagcaagaggaacatagtgg |
210 |
Q |
| |
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||||| ||| | ||||||||| |||| |
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|
| T |
554979 |
tagtcggtaagaggaggaacattgtgg |
555005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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