View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9829_low_6 (Length: 513)
Name: NF9829_low_6
Description: NF9829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9829_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 17 - 504
Target Start/End: Complemental strand, 39228227 - 39227740
Alignment:
| Q |
17 |
actacttggtatggtattcaatgtgacacaaacaatagttctgttgtgtcactagatatatcaaacttgaatatttctggaactttttcatcttccatca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39228227 |
actacttggtatggtattcaatgtgacacaaacaatagttctgttgtgtcactggatatatcaaacttgaatgtttctggaactttttcatcttccatca |
39228128 |
T |
|
| Q |
117 |
caaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttggaaattctctcatttgaaagagcttgaagttcttga |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39228127 |
caaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttggaaattctctcatttgaaagagcttgaagttcttga |
39228028 |
T |
|
| Q |
217 |
tgcttacaataatgagttcaattgttcactccctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaa |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39228027 |
tgcttacaataatgagttcaattgttcactccctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaa |
39227928 |
T |
|
| Q |
317 |
attccttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaatcttacta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227927 |
attccttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaatcttacta |
39227828 |
T |
|
| Q |
417 |
atcttacacaccttttgttaggttattacaatgagtttgatggtgaaattccacctcattttggtaaccttgttaatttagttcatct |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227827 |
atcttacacaccttttgttaggttattacaatgagtttgatggtgaaattccacctcattttggtaaccttgttaatttagttcatct |
39227740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 17 - 504
Target Start/End: Complemental strand, 25547426 - 25546939
Alignment:
| Q |
17 |
actacttggtatggtattcaatgtgacacaaacaatagttctgttgtgtcactagatatatcaaacttgaatatttctggaactttttcatcttccatca |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25547426 |
actacttggtatgatattcaatgtgacacaaacaatagttctgttttgtcactagatatatcaaacttgaatgtttctggaactttttcatcttccatca |
25547327 |
T |
|
| Q |
117 |
caaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttggaaattctctcatttgaaagagcttgaagttcttga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547326 |
caaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttggaaattctctcatttgaaagagcttgaagttcttga |
25547227 |
T |
|
| Q |
217 |
tgcttacaataatgagttcaattgttcactccctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaa |
316 |
Q |
| |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547226 |
tgcttacaacaatgagttcaattgttcactacctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaa |
25547127 |
T |
|
| Q |
317 |
attccttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaatcttacta |
416 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25547126 |
attccttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaatcttacta |
25547027 |
T |
|
| Q |
417 |
atcttacacaccttttgttaggttattacaatgagtttgatggtgaaattccacctcattttggtaaccttgttaatttagttcatct |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25547026 |
atcttacacaccttttgttaggttattacaatgagtttgatggtgaaattccacctcattttggtaaccttgttaatttacttcatct |
25546939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 409
Target Start/End: Original strand, 16733310 - 16733375
Alignment:
| Q |
344 |
cagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaat |
409 |
Q |
| |
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|||||||| | |||||||||||| || ||||||||||| ||||| ||||| ||||||||||||| |
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| T |
16733310 |
cagcttaattttttgtctcttgctggaaatgatttgagtggttttttacctagtgagcttggaaat |
16733375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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