View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9829_low_7 (Length: 469)
Name: NF9829_low_7
Description: NF9829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9829_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 41854215 - 41853762
Alignment:
| Q |
1 |
accagagagatcagctaaattttggttatactaaaagtccttagtcctaacaa-tgnnnnnnncctgaaattgctttcagaaaggttgcgcccaaatgga |
99 |
Q |
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| T |
41854215 |
accacagaaatcagctaaattttggttatactaaaactcctttgtcctaacaacttttttcttcctgaaattgctttcagaaaggttgcgcccaaatgga |
41854116 |
T |
|
| Q |
100 |
tggatcagataagagtgagctgtgacagtagccttgaaggaccaaatgaagatggctacaactggagaaaatatggtcagaaagatatccttggcaccaa |
199 |
Q |
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| T |
41854115 |
tggatcagataagagtgagctgtgacagtagccttgaaggaccaaatgaagatggctacaactggagaaaatatggtcagaaagatatccttggcaccaa |
41854016 |
T |
|
| Q |
200 |
acatccaaggtgagaggaattctaatatcatgcttaagaaaaaaccataagaattcttgaattatgtataaattgcatttacctgtgatgtcatctcatt |
299 |
Q |
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| T |
41854015 |
acatccaaggtgagaggaattctaatatcatgcttaagaaaaaaccataagaattcttgaattatgtataaattgcatttacctgtgatgtcatctcatt |
41853916 |
T |
|
| Q |
300 |
aacaacccattatgacatttgcagaagttactatcggtgcaccttccgcaacacacaggactgctgggcgacgaagcaagtgcagagatcagatgaagat |
399 |
Q |
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| T |
41853915 |
aacaacccattatgacatttgcagaagttactatcggtgcaccttccgcaacacacaggactgctgggcgacgaagcaagtgcagagatcagatgaagat |
41853816 |
T |
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| Q |
400 |
ccgacaatatttgacataacttatagaggaaagcatacatgttctcagggaaac |
453 |
Q |
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| T |
41853815 |
ccgacaatatttgacataacttatagaggaaagcatacatgttctcagggaaac |
41853762 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 41261617 - 41261569
Alignment:
| Q |
162 |
tggagaaaatatggtcagaaagatatccttggcaccaaacatccaaggt |
210 |
Q |
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| T |
41261617 |
tggagaaaatatggtcagaaagacatccttggagccatgcatccaaggt |
41261569 |
T |
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