View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9829_low_9 (Length: 402)
Name: NF9829_low_9
Description: NF9829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9829_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 6e-90; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 121 - 358
Target Start/End: Complemental strand, 20989465 - 20989233
Alignment:
| Q |
121 |
acattgaatgtgatttcaccactcaactttgcatgcttaatctggtctgaggcattgtggatttggtatttcaggaacttatgatggtatttatagtgtc |
220 |
Q |
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| T |
20989465 |
acattgaatgtgatttcaccactcaactttgcatgcttaatctggtctaaggcattatggatttggtatttcaggaacttatgatggtatttatagtgtc |
20989366 |
T |
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| Q |
221 |
aaaactcaaaagaacactcatttcacatgtcctcaaatgtttgaaacaaaactatttcattttcaagtgttaatactagtttgct--nnnnnnnnngtat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20989365 |
-------aaaagaacactcatttcacatgtcctcaaatgtttgaaacaaaactatttcattttcaagtgttaatactagtttgctaaaaaaaaaaagtat |
20989273 |
T |
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| Q |
319 |
taatactagttttttgtcataagaaaaaagtgtttctcat |
358 |
Q |
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| T |
20989272 |
taatactagttttttgtcataagaaaaaagtgtttctcat |
20989233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 121 - 262
Target Start/End: Complemental strand, 21000544 - 21000408
Alignment:
| Q |
121 |
acattgaatgtgatttcaccactcaactttgcatgcttaatctggtctgaggcattgtggatttggtatttcaggaacttatgatggtatttatagtgtc |
220 |
Q |
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| T |
21000544 |
acattgaatgcgatttcacctctcaactttgcatgcttaatctggtctaaggcattgtagatttggtatttcaggaacttatgatggtatttatagtgt- |
21000446 |
T |
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| Q |
221 |
aaaactcaaaagaacactcatttcacatgtcctcaaatgttt |
262 |
Q |
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| T |
21000445 |
----gtcaatagaacattgatttcacatgtcctctaatgttt |
21000408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 20989585 - 20989528
Alignment:
| Q |
1 |
gtgagaggattatctttgataatatctaatgtgaagaacaactactttaatctcttta |
58 |
Q |
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| T |
20989585 |
gtgagaggattatctttgataatatctaatgtgaagaacaactactttaatctcttta |
20989528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 21000660 - 21000610
Alignment:
| Q |
1 |
gtgagaggattatctttgataatatctaatgtgaagaacaactactttaat |
51 |
Q |
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| T |
21000660 |
gtgagaggattatctttgataatatctaatgtgaagaacaactactttaat |
21000610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 20979593 - 20979488
Alignment:
| Q |
122 |
cattgaatgtgatttcaccactcaactttgcatgcttaatctggtctgaggcattgtgg--------atttggtatttcaggaacttatgatggtattta |
213 |
Q |
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||||||||||||||||||| || |||| || |||||||||||| | ||||| ||||||| |||||| |||||||||||||| ||||||||||| |
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| T |
20979593 |
cattgaatgtgatttcaccgctgaactatgtatgcttaatctgatatgaggaattgtgggctagggaatttggcatttcaggaacttacgatggtattta |
20979494 |
T |
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| Q |
214 |
tagtgt |
219 |
Q |
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|||||| |
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| T |
20979493 |
tagtgt |
20979488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 20999860 - 20999816
Alignment:
| Q |
258 |
tgtttgaaacaaaactatttcattttcaagtgttaatactagttt |
302 |
Q |
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| T |
20999860 |
tgtttgaagcaaaactatttcattttcaagtgttaatactagttt |
20999816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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