View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9830_high_1 (Length: 631)
Name: NF9830_high_1
Description: NF9830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9830_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 79 - 542
Target Start/End: Original strand, 26578826 - 26579289
Alignment:
| Q |
79 |
tgtctatcattccaagtgtgttcggaaccggacgaagaagcaacatcttcgacccattctctctagacttatgggatccattccaaaacttccctaccac |
178 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26578826 |
tgtctatcattccaagtgtcttcggaaccggacgaagaagcaacatcttcgacccattctctctagacttatgggatccattccaaaacttccctaccac |
26578925 |
T |
|
| Q |
179 |
caacgaaacatcatcgttcgctaatgcgcgcattgactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaa |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26578926 |
caacgaaacatcatcgttcgctaatgcgcgcactgactggaaggaaacaccggaagcacacatcttcaaagccgatcttcccggcgtgaagaaggaggaa |
26579025 |
T |
|
| Q |
279 |
gtgaaggttgagattgaagatgatcatgttttgaagataagtggagagaggaaaattgagaaggaagacaagaacgatacctggcatcgcgttgaacgaa |
378 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26579026 |
gtgaaggttgagattgaagaggatcgtgttttgaagataagtggagagaggaaaattgagaaggaagacaagaatgatacctggcatcgcgttgaacgaa |
26579125 |
T |
|
| Q |
379 |
gccagggaagttttctccggcggtttaggttgccggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcc |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26579126 |
gccagggaagttttctccggcggtttaggttgccggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcc |
26579225 |
T |
|
| Q |
479 |
taaggtggaggttaagaagcctgatgtgaaacctgttcagattacaggctaagtcttcaaaatc |
542 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26579226 |
taaggtggaggttaagaagcctgatgtgaagcctgttcagattacaggctaagtcttcaaaatc |
26579289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 213 - 483
Target Start/End: Original strand, 34918961 - 34919231
Alignment:
| Q |
213 |
gactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttttga |
312 |
Q |
| |
|
|||||||| ||||||| ||||| ||||| |||| | |||||||| || ||||||| || |||||||| ||||| || ||||||| |||| ||| |
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| T |
34918961 |
gactggaaagaaacacaagaagctcacgtgttcagtgtagatcttcctggtttgaagaaagaagaagtgaaagttgaaatagaagatggaaatgtgttgc |
34919060 |
T |
|
| Q |
313 |
agataagtggagagaggaaaattgagaaggaagacaagaacgatacctggcatcgcgttgaacgaagc-cagggaagttttctccggcggtttaggttgc |
411 |
Q |
| |
|
|||||||||| ||||| || | ||| ||||||| ||| | |||| |||||||| ||||| |||| | ||||||||| | || |||||||||||| |
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| T |
34919061 |
agataagtggtgagagaaacaaagagcaggaagagaaggatgataagtggcatcgtgttgagagaagttctgggaagttta-tgaggaggtttaggttgc |
34919159 |
T |
|
| Q |
412 |
cggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcctaagg |
483 |
Q |
| |
|
| ||||||| ||| ||||| |||| |||||||| ||||||||||| || |||||||||| ||||||||||| |
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|
| T |
34919160 |
ctgagaatgttaaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaagg |
34919231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 541 - 615
Target Start/End: Original strand, 26579310 - 26579377
Alignment:
| Q |
541 |
tccacgaatcgatgtgacacataagatggattctcccgggtatattttgaacaataaggttggagatgagtaatc |
615 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||| ||||| |
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|
| T |
26579310 |
tccacgaatcaatgtgacacataagatggattctccc-------ttctgaacaataaggttggagatgaataatc |
26579377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 210 - 505
Target Start/End: Complemental strand, 36296773 - 36296478
Alignment:
| Q |
210 |
attgactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttt |
309 |
Q |
| |
|
||||| |||||||| || || ||||||||||| || ||||| |||||||| || |||||||||| |||||||||||||| ||||||||||| ||| |
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|
| T |
36296773 |
attgattggaaggagaccccagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttc |
36296674 |
T |
|
| Q |
310 |
tgaagataagtggagagaggaaaattgagaaggaagacaagaacgatacctggcatcgcgttgaacgaagccagggaagttttctccggcggtttaggtt |
409 |
Q |
| |
|
| |||| |||||||||||||| ||||||| |||||||||||| | ||||||||||| || || ||| |||| ||| | || |||| || || |
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|
| T |
36296673 |
ttcagattagtggagagaggaacgttgagaaagaagacaagaacaaccaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagatt |
36296574 |
T |
|
| Q |
410 |
gccggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcctaaggtggaggttaagaagcctgatgt |
505 |
Q |
| |
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||| || ||||| ||| ||||| |||||||||||| |||||||||||||| || ||||| | |||||| || | || |||||||| |||||||| |
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| T |
36296573 |
gcccgaaaatgccaagatggatcaggtgaaagctgcaatggagaatggtgttctcactgtaactgttccaaaagaagaagttaagaaacctgatgt |
36296478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 210 - 505
Target Start/End: Complemental strand, 35073000 - 35072705
Alignment:
| Q |
210 |
attgactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttt |
309 |
Q |
| |
|
||||| |||||||| || || ||||| || || ||||| || |||||||| || ||||||||||||||||||||||||| |||||||||||| ||| |
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|
| T |
35073000 |
attgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttc |
35072901 |
T |
|
| Q |
310 |
tgaagataagtggagagaggaaaattgagaaggaagacaagaacgatacctggcatcgcgttgaacgaagccagggaagttttctccggcggtttaggtt |
409 |
Q |
| |
|
| ||||||| || |||||||| ||||| || ||||| ||||| ||| |||||||| || || || ||| |||| || | || ||||||| | |
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|
| T |
35072900 |
ttcagataagcggtgagaggaacattgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagata |
35072801 |
T |
|
| Q |
410 |
gccggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcctaaggtggaggttaagaagcctgatgt |
505 |
Q |
| |
|
|| |||||||| || ||||| | |||||||||| |||||||||||||| || ||||||| |||||| || | || |||||||| |||||||| |
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|
| T |
35072800 |
accagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgt |
35072705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 216 - 356
Target Start/End: Original strand, 35097688 - 35097828
Alignment:
| Q |
216 |
tggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttttgaaga |
315 |
Q |
| |
|
|||||||| || || |||||||| || ||| | || |||||||| || |||||||||| |||||||||||||| ||||||| |||| ||| | ||| |
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|
| T |
35097688 |
tggaaggagaccccagaagcacatgtgttcgaggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaaggtgatagggttcttcaga |
35097787 |
T |
|
| Q |
316 |
taagtggagagaggaaaattgagaaggaagacaagaacgat |
356 |
Q |
| |
|
|||| ||||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
35097788 |
taagcggagagaggaatgttgagaaagaagataagaacgat |
35097828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 210 - 302
Target Start/End: Original strand, 35106860 - 35106952
Alignment:
| Q |
210 |
attgactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgat |
302 |
Q |
| |
|
||||| |||||||| || || ||||| || || ||||| || |||||||| || ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35106860 |
attgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgat |
35106952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 36936064 - 36936005
Alignment:
| Q |
243 |
ttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgat |
302 |
Q |
| |
|
||||| || |||||||| || ||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
36936064 |
ttcaaggcggatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgat |
36936005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 36940772 - 36940703
Alignment:
| Q |
233 |
agcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgat |
302 |
Q |
| |
|
||||||||| ||||| || ||| |||| || ||||||||||||||| ||| || ||||||||||||||| |
|
|
| T |
36940772 |
agcacacgtgttcaatgctgattttccaggaatgaagaaggaggaagcgaaagtagagattgaagatgat |
36940703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 276 - 356
Target Start/End: Original strand, 35098037 - 35098117
Alignment:
| Q |
276 |
gaagtgaaggttgagattgaagatgatcatgttttgaagataagtggagagaggaaaattgagaaggaagacaagaacgat |
356 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||| | ||||||| ||||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
35098037 |
gaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagaggaatgttgagaaagaagataagaacgat |
35098117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 210 - 505
Target Start/End: Complemental strand, 24014499 - 24014204
Alignment:
| Q |
210 |
attgactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttt |
309 |
Q |
| |
|
||||| |||||||| || || |||||||| || ||||| || |||||||| || ||||||||||||||||||||||||| ||||||| |||| ||| |
|
|
| T |
24014499 |
attgattggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaaggtgatagggttc |
24014400 |
T |
|
| Q |
310 |
tgaagataagtggagagaggaaaattgagaaggaagacaagaacgatacctggcatcgcgttgaacgaagccagggaagttttctccggcggtttaggtt |
409 |
Q |
| |
|
| ||||||| ||||||||||| ||||||| ||||| ||||||||| |||||||| || || || ||| |||| || | || | || ||||| |
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|
| T |
24014399 |
ttcagataagcggagagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgcagcagcggaaagttcatgaggagattcaggtt |
24014300 |
T |
|
| Q |
410 |
gccggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcctaaggtggaggttaagaagcctgatgt |
505 |
Q |
| |
|
||| || ||||| || ||||| | |||||||||| |||||||||||||| || ||||||| |||||| || | || |||||||| |||||||| |
|
|
| T |
24014299 |
gcccgaaaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgt |
24014204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 302
Target Start/End: Complemental strand, 24041050 - 24040964
Alignment:
| Q |
216 |
tggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgat |
302 |
Q |
| |
|
|||||||| || || |||||||| || ||||| || |||||||| || |||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
24041050 |
tggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgat |
24040964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 213 - 356
Target Start/End: Original strand, 3123076 - 3123219
Alignment:
| Q |
213 |
gactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttttga |
312 |
Q |
| |
|
||||| |||||||| | |||||||| || |||||||| |||||||| || |||||||||| || ||||||||||| |||||||||||| | ||| | |
|
|
| T |
3123076 |
gactgaaaggaaactctagaagcacatgtgttcaaagctgatcttccagggttgaagaaggaagaggtgaaggttgaaattgaagatgataaggttcttc |
3123175 |
T |
|
| Q |
313 |
agataagtggagagaggaaaattgagaaggaagacaagaacgat |
356 |
Q |
| |
|
||||||| ||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
3123176 |
agataagcggagaaaggaccgttgagaaagaagacaagaacgat |
3123219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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