View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9830_high_12 (Length: 248)
Name: NF9830_high_12
Description: NF9830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9830_high_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 248
Target Start/End: Original strand, 7542417 - 7542653
Alignment:
| Q |
12 |
agacaaagaagatggattggaaactgttcttgaaatacctatacctgaagaaatgttttcaaacatgggaagtaatgtgacattaagatggcaaaatatg |
111 |
Q |
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| T |
7542417 |
agacaaagaagatggattggaaactgttcttgaaatacctatacctgaagaaatgttttcaaacatgggaagtaatgtgacattaagatggcaaaatatg |
7542516 |
T |
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| Q |
112 |
ttaacatggatgaaggctcaaactgaggataaattgtcttcccctacggtttcagcacgtttaaatgaacttcgatttttgctttaccttgttggctctc |
211 |
Q |
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| T |
7542517 |
ttaacatggatgaaggctcaaactgaggataaattgtcttcccctacggtttcagcacgtttaaatgaacttcgatttttgctttaccttgttggctctc |
7542616 |
T |
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| Q |
212 |
ctcttatccctcttcaagttcaattaggacattccgt |
248 |
Q |
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| T |
7542617 |
ctcttatccctcttcaagttcaattaggacattccgt |
7542653 |
T |
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