View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9830_high_17 (Length: 216)
Name: NF9830_high_17
Description: NF9830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9830_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 2177394 - 2177195
Alignment:
| Q |
1 |
ttgacccctaggtcacttcattgatattgagcagnnnnnnnttcaggtaattagtccatgaccctttgtgccccgccaccctagacatatcgatcatatg |
100 |
Q |
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| T |
2177394 |
ttgacccctaggtcacttcattgatattgagcagaaaaaaattcaggtaattagtccatgaccctttgtgccccgccaccctagacatatcgatcatatg |
2177295 |
T |
|
| Q |
101 |
cttatccttatatcatatcatatacttcataatcaactactataaattcactcttctatgtccatatttttcctcaccctttcttttccttcccacttct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2177294 |
cttatccttatatcatatcatatacttcataatcaactactataaattcactcttctatgtccatatttttcctcaccc-ttcttttccttcccacttct |
2177196 |
T |
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