View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9830_high_6 (Length: 350)

Name: NF9830_high_6
Description: NF9830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9830_high_6
NF9830_high_6
[»] chr3 (8 HSPs)
chr3 (17-123)||(39327197-39327303)
chr3 (182-318)||(39328621-39328757)
chr3 (172-240)||(1543202-1543270)
chr3 (178-240)||(6784825-6784887)
chr3 (186-240)||(46786686-46786740)
chr3 (178-229)||(43790686-43790737)
chr3 (178-240)||(9107060-9107122)
chr3 (192-240)||(43214508-43214556)
[»] chr2 (5 HSPs)
chr2 (180-239)||(35664567-35664626)
chr2 (178-240)||(24026736-24026798)
chr2 (178-241)||(14902265-14902328)
chr2 (178-240)||(6584313-6584376)
chr2 (188-242)||(25642765-25642819)
[»] chr4 (5 HSPs)
chr4 (180-239)||(19936297-19936356)
chr4 (178-240)||(41668854-41668916)
chr4 (178-236)||(7372678-7372736)
chr4 (178-236)||(53423297-53423355)
chr4 (178-238)||(40303478-40303538)
[»] chr1 (8 HSPs)
chr1 (180-239)||(34454146-34454205)
chr1 (187-238)||(50878600-50878651)
chr1 (173-231)||(23165939-23165997)
chr1 (187-240)||(27664109-27664162)
chr1 (178-229)||(7230420-7230471)
chr1 (178-236)||(5450636-5450694)
chr1 (187-236)||(35938541-35938590)
chr1 (178-215)||(42312939-42312976)
[»] chr7 (4 HSPs)
chr7 (178-240)||(37808029-37808091)
chr7 (178-221)||(30275296-30275339)
chr7 (180-241)||(20246658-20246719)
chr7 (196-240)||(48669665-48669709)
[»] chr8 (2 HSPs)
chr8 (178-240)||(32237012-32237074)
chr8 (178-237)||(9315398-9315457)
[»] chr6 (4 HSPs)
chr6 (178-237)||(4349890-4349949)
chr6 (178-237)||(4350129-4350188)
chr6 (182-229)||(14333988-14334034)
chr6 (187-236)||(7271843-7271892)
[»] chr5 (2 HSPs)
chr5 (187-238)||(23127184-23127235)
chr5 (175-243)||(35447130-35447198)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 39327197 - 39327303
Alignment:
Q  17 aactctaaggatgaggatgttggtaacaatagtgtcaaaatgatgttattaacgttgtaaaaaacgatcacatgatcttgtttatagctgcatcattttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39327197 aactctaaggatgaggatgttggtaacaatagtgtcaaaatgatgttattaacgttgtaaaaaacgatcacatgatcttgtttatagctgcatcattttt 39327296  T
Q  117 tgtttgt 123  Q
    |||||||    
T  39327297 tgtttgt 39327303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 182 - 318
Target Start/End: Original strand, 39328621 - 39328757
Alignment:
Q  182 tattagttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacggccttggctggatccttcaaaacttcttgctgtaattgacttct 281  Q
    |||||||||||| | || |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||| |||||||    
T  39328621 tattagttaggacctaatttgtaggttcaccctagaccaccgaaatctcataaacggctttggctggatccttcaaaactacttgctgcaatcgacttct 39328720  T
Q  282 atgctgcctaataggatatgacaacatggttctcacc 318  Q
    |||||||| ||||||||||||||||||||||||||||    
T  39328721 atgctgccaaataggatatgacaacatggttctcacc 39328757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 1543270 - 1543202
Alignment:
Q  172 tttatttatttattagttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacggcc 240  Q
    ||||| ||||||||||||||||| ||||||||||||||||  ||||||| | |||||||||||||||||    
T  1543270 tttatatatttattagttaggattcaaattgtaggttcgctttagaccatcaaaatctcataaacggcc 1543202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 6784825 - 6784887
Alignment:
Q  178 tatttattagttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacggcc 240  Q
    |||||||||||||| | |||||||||| ||||||| ||||||||| |||||||||| ||||||    
T  6784825 tatttattagttagaacccaaattgtaagttcgccatagaccaccaaaatctcatatacggcc 6784887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 46786740 - 46786686
Alignment:
Q  186 agttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacggcc 240  Q
    ||||| ||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  46786740 agttaagatccaaattgtaggttcgccctaggccaccaaaatctcagaaacggcc 46786686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 43790686 - 43790737
Alignment:
Q  178 tatttattagttaggatccaaattgtaggttcgccctagaccaccgaaatct 229  Q
    |||||||||||||||| |||||||||| ||||||||||| ||||| ||||||    
T  43790686 tatttattagttaggacccaaattgtaagttcgccctaggccaccaaaatct 43790737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 9107122 - 9107060
Alignment:
Q  178 tatttattagttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacggcc 240  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||| ||| || | ||||||||    
T  9107122 tatttattagttatgatccaaatggtaggttcgccctaggccaccaaaaacttagaaacggcc 9107060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 43214508 - 43214556
Alignment:
Q  192 gatccaaattgtaggttcgccctagaccaccgaaatctcataaacggcc 240  Q
    ||||||||||||| |||||||||| | || | |||||||||||||||||    
T  43214508 gatccaaattgtaagttcgccctataacatcaaaatctcataaacggcc 43214556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 35664567 - 35664626
Alignment:
Q  180 tttattagttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacggc 239  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||    
T  35664567 tttattagttaggatccaaaatgtaggttcgccctagaccaccaaaatctcaaaaacggc 35664626  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 24026736 - 24026798
Alignment:
Q  178 tatttattagttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacggcc 240  Q
    ||||||||||||| |||| |||||||||||||||||||||||||| |||||||| || |||||    
T  24026736 tatttattagttaagatctaaattgtaggttcgccctagaccaccaaaatctcaaaatcggcc 24026798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 14902328 - 14902265
Alignment:
Q  178 tatttattagttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacggcct 241  Q
    |||||||||||||||| |||||||||| ||||||| ||||||||| |||||| | |||||||||    
T  14902328 tatttattagttaggacccaaattgtatgttcgccatagaccaccaaaatcttagaaacggcct 14902265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 6584313 - 6584376
Alignment:
Q  178 tatttattagttaggatccaaattgtaggttcgccc-tagaccaccgaaatctcataaacggcc 240  Q
    |||| |||| |||||| |||||||||||||||||||  |||||||| |||||||| ||||||||    
T  6584313 tattcattaattaggacccaaattgtaggttcgcccaaagaccaccaaaatctcagaaacggcc 6584376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 25642819 - 25642765
Alignment:
Q  188 ttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacggcctt 242  Q
    |||||| ||||||||||||||| |||| ||||||| ||| |||| ||||||||||    
T  25642819 ttaggacccaaattgtaggttcaccctcgaccaccaaaaactcagaaacggcctt 25642765  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 19936297 - 19936356
Alignment:
Q  180 tttattagttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacggc 239  Q
    |||||||||||||| |||||||||||||||| ||||||||||| |||||||| |||||||    
T  19936297 tttattagttaggacccaaattgtaggttcgtcctagaccaccaaaatctcagaaacggc 19936356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 41668916 - 41668854
Alignment:
Q  178 tatttattagttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacggcc 240  Q
    |||||||||||||||| ||||||| |||||||||||||| ||||| |||||||| ||| ||||    
T  41668916 tatttattagttaggacccaaattataggttcgccctaggccaccaaaatctcagaaaaggcc 41668854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 7372678 - 7372736
Alignment:
Q  178 tatttattagttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaac 236  Q
    ||||||||||||| ||||||||||||||||||||||||  |||  ||||||||| ||||    
T  7372678 tatttattagttaagatccaaattgtaggttcgccctaagccattgaaatctcagaaac 7372736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 53423297 - 53423355
Alignment:
Q  178 tatttattagttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaac 236  Q
    |||||||||||||||| | |||||||||||||  |||| |||||| |||||||||||||    
T  53423297 tatttattagttaggacctaaattgtaggttcatcctataccaccaaaatctcataaac 53423355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 40303538 - 40303478
Alignment:
Q  178 tatttattagttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacgg 238  Q
    ||||||||||||||| ||||||||||| |||| | |||| | ||| |||||||| ||||||    
T  40303538 tatttattagttagggtccaaattgtaagttcactctaggcaaccaaaatctcagaaacgg 40303478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 34454146 - 34454205
Alignment:
Q  180 tttattagttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacggc 239  Q
    |||||||||||||| |||||||||||||||||||||| ||||| |||||||| |||||||    
T  34454146 tttattagttaggacccaaattgtaggttcgccctaggccaccaaaatctcagaaacggc 34454205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 50878651 - 50878600
Alignment:
Q  187 gttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacgg 238  Q
    |||| ||||||||||||||||||| ||||||||||| |||||||| ||||||    
T  50878651 gttatgatccaaattgtaggttcgtcctagaccaccaaaatctcaaaaacgg 50878600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 23165939 - 23165997
Alignment:
Q  173 ttatttatttattagttaggatccaaattgtaggttcgccctagaccaccgaaatctca 231  Q
    |||| ||||||||| |||||||  ||||| |||||||||||||||||||| ||||||||    
T  23165939 ttatatatttattaattaggatttaaattataggttcgccctagaccaccaaaatctca 23165997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 27664109 - 27664162
Alignment:
Q  187 gttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacggcc 240  Q
    ||||||| ||||||||||||||| |||||| ||||| |||||||| ||||||||    
T  27664109 gttaggacccaaattgtaggttctccctaggccaccaaaatctcagaaacggcc 27664162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 7230420 - 7230471
Alignment:
Q  178 tatttattagttaggatccaaattgtaggttcgccctagaccaccgaaatct 229  Q
    |||||||||||||| || ||||||||||||||| |||| |||||| ||||||    
T  7230420 tatttattagttagaattcaaattgtaggttcgtcctataccaccaaaatct 7230471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 5450694 - 5450636
Alignment:
Q  178 tatttattagttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaac 236  Q
    ||||||||||||| |||||||||| ||| |||||  ||||||| | |||||||||||||    
T  5450694 tatttattagttatgatccaaattatagattcgcgatagaccatcaaaatctcataaac 5450636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 35938541 - 35938590
Alignment:
Q  187 gttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaac 236  Q
    |||||||||||||||||||||||  ||||| ||||| |||||||| ||||    
T  35938541 gttaggatccaaattgtaggttcttcctaggccaccaaaatctcagaaac 35938590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 42312939 - 42312976
Alignment:
Q  178 tatttattagttaggatccaaattgtaggttcgcccta 215  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  42312939 tatttattagtcaggatccaaattgcaggttcgcccta 42312976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 37808091 - 37808029
Alignment:
Q  178 tatttattagttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacggcc 240  Q
    |||||||||||||||| | ||||| |||| |||||||| |||||| |||||||||||||||||    
T  37808091 tatttattagttaggacctaaattataggctcgccctaaaccaccaaaatctcataaacggcc 37808029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 30275339 - 30275296
Alignment:
Q  178 tatttattagttaggatccaaattgtaggttcgccctagaccac 221  Q
    |||||||||||||| ||||||||||||| ||||||| |||||||    
T  30275339 tatttattagttagaatccaaattgtagattcgccccagaccac 30275296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 20246719 - 20246658
Alignment:
Q  180 tttattagttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacggcct 241  Q
    ||||||||||| || | ||||| ||||||| || ||| ||||| ||||||||||||||||||    
T  20246719 tttattagttatgacctaaattataggttcaccataggccaccaaaatctcataaacggcct 20246658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 48669665 - 48669709
Alignment:
Q  196 caaattgtaggttcgccctagaccaccgaaatctcataaacggcc 240  Q
    ||||||||||||||||| ||| ||||| |||||| ||||||||||    
T  48669665 caaattgtaggttcgccttaggccaccaaaatcttataaacggcc 48669709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 32237012 - 32237074
Alignment:
Q  178 tatttattagttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacggcc 240  Q
    |||||||||||||||| |||||||||||||||| | ||| ||||| | |||||| ||||||||    
T  32237012 tatttattagttaggacccaaattgtaggttcgtcttaggccaccaatatctcagaaacggcc 32237074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 9315457 - 9315398
Alignment:
Q  178 tatttattagttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacg 237  Q
    |||||||||||||| |||||||| ||  ||||| | ||||||||| ||||||||||||||    
T  9315457 tatttattagttagtatccaaatcgtcagttcgtcttagaccaccaaaatctcataaacg 9315398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 4349949 - 4349890
Alignment:
Q  178 tatttattagttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacg 237  Q
    |||||| |||||| || ||||||||| |||||||||||| ||||| |||||||| |||||    
T  4349949 tatttactagttatgacccaaattgtgggttcgccctaggccaccaaaatctcagaaacg 4349890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 4350188 - 4350129
Alignment:
Q  178 tatttattagttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacg 237  Q
    |||||| |||||| || ||||||||| |||||||||||| ||||| |||||||| |||||    
T  4350188 tatttactagttatgacccaaattgtgggttcgccctaggccaccaaaatctcagaaacg 4350129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 14333988 - 14334034
Alignment:
Q  182 tattagttaggatccaaattgtaggttcgccctagaccaccgaaatct 229  Q
    |||||||||||| |||||||||||||||||||||| ||||| ||||||    
T  14333988 tattagttaggacccaaattgtaggttcgccctag-ccaccaaaatct 14334034  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 7271843 - 7271892
Alignment:
Q  187 gttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaac 236  Q
    ||||||||||||||||||| |||| ||||  ||||| |||||||||||||    
T  7271843 gttaggatccaaattgtagattcgtcctatgccaccaaaatctcataaac 7271892  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 23127235 - 23127184
Alignment:
Q  187 gttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacgg 238  Q
    ||||||||||||||||||| |||||||| | ||||| |||||||| ||||||    
T  23127235 gttaggatccaaattgtagattcgcccttggccaccaaaatctcagaaacgg 23127184  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 35447130 - 35447198
Alignment:
Q  175 atttatttattagttaggatccaaattgtaggttcgccctagaccaccgaaatctcataaacggccttg 243  Q
    ||||||| |||| ||| ||||||||||||||||||||  ||| ||| | ||||||||| || |||||||    
T  35447130 atttattaattaattatgatccaaattgtaggttcgctttaggccatcaaaatctcattaatggccttg 35447198  T

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