View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9830_high_9 (Length: 257)
Name: NF9830_high_9
Description: NF9830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9830_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 2136011 - 2136244
Alignment:
| Q |
1 |
ccatgtaggaaatgaactgatgttttgtaggatacttaggaaaagtttgaggaaaactcatcataggtagttcacaaaaatgtttaggtaaatgaagttt |
100 |
Q |
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| T |
2136011 |
ccatgtaggaaatgaactgatgttttgtaggatacttaggaaaagtttgaggaaaactcatcataggtagttcacaaaaatgtttaggtaaatgaagttt |
2136110 |
T |
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| Q |
101 |
taaacggtcataggttctattttgccatagtgaagctatgcaatcacttctctcaagaatgagacttggtactccttgttctgataaacaagcagctact |
200 |
Q |
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| T |
2136111 |
taaacggtcataggttctattttgccatagtgaagctatgcaatcacttctctcaagaatgagacttggtactccttgctctgataaacaagcagctact |
2136210 |
T |
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| Q |
201 |
gctatacctgaaggaccagcacctactatgatag |
234 |
Q |
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| T |
2136211 |
gctatacctgaaggaccagcacctactatgatag |
2136244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 29857860 - 29857940
Alignment:
| Q |
64 |
taggtagttcacaaaaatgtttaggtaaatgaagttttaaacggtcataggttctattttgccatagtgaagctatgcaat |
144 |
Q |
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| T |
29857860 |
taggtagttgacagaattgtttagggaggtgaagttttaatctgtcatatgttcttttttgccatagtgaagctatgcaat |
29857940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 39839170 - 39839088
Alignment:
| Q |
64 |
taggtagttcacaaaaatgtttaggtaaatgaagttttaaacggtcataggttctattttgccatagtgaagctatgcaatca |
146 |
Q |
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| T |
39839170 |
taggtagttgacagaattgttttggaaggtgaagtttcaatctgtcgtaggttcttttttgccatagtgatgctatgcaatca |
39839088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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