View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9830_low_10 (Length: 325)
Name: NF9830_low_10
Description: NF9830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9830_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 43221728 - 43221444
Alignment:
| Q |
19 |
tgatcgaagaatggtaaggcatgatttgcagttgtttctcagtatgtaatataattcatattgctaacatatatacttattaaatgttagagatcatatt |
118 |
Q |
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| T |
43221728 |
tgatcgaagaatggtaaggcatgatttgcagttgtttctcagtatgtaatataattcatattgctaacatatatacttattaaatgttagagatcatatt |
43221629 |
T |
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| Q |
119 |
ggtgatgtgatattaaatttttacaagtcttactcttattcaactatgtcaaattcataaaatgacgagtcaacgcataattgaatgatacccaaaaatt |
218 |
Q |
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| T |
43221628 |
ggtgatgtgatattaaatttttacaagtcttactcttattcaactatgtcaaattcataaaatgacgagtcaacgcataattgaatgatacccaaaaaat |
43221529 |
T |
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| Q |
219 |
ttctatgcacatgattttaaatttaaacacttgaatatgaatttgggtgattttcaagaacttgcatacttaattatttgtttcc |
303 |
Q |
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| T |
43221528 |
ttctatgcacatgattttaaatttaaacacttgaatatgaatttgggtgattttcaagaacttgcatacttaattatttgtttcc |
43221444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 43231146 - 43231095
Alignment:
| Q |
19 |
tgatcgaagaatggtaaggcatgatttgcagttgtttctcagtatgtaatat |
70 |
Q |
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|||| ||||||||||||||||| |||| || ||||||| ||||||||||||| |
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| T |
43231146 |
tgatagaagaatggtaaggcataattttcaattgtttcacagtatgtaatat |
43231095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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