View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9830_low_15 (Length: 253)

Name: NF9830_low_15
Description: NF9830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9830_low_15
NF9830_low_15
[»] chr7 (14 HSPs)
chr7 (14-253)||(8630251-8630490)
chr7 (14-193)||(8584436-8584615)
chr7 (18-201)||(8647728-8647911)
chr7 (14-184)||(3148394-3148564)
chr7 (18-182)||(8655376-8655540)
chr7 (18-159)||(6790437-6790578)
chr7 (18-197)||(7876730-7876909)
chr7 (22-169)||(13332074-13332221)
chr7 (18-155)||(10492939-10493076)
chr7 (18-208)||(1302338-1302528)
chr7 (18-186)||(8668492-8668660)
chr7 (106-208)||(8660359-8660461)
chr7 (18-146)||(8602761-8602889)
chr7 (18-89)||(8591425-8591496)
[»] chr2 (4 HSPs)
chr2 (16-183)||(16660976-16661143)
chr2 (106-198)||(16656495-16656587)
chr2 (31-159)||(14705503-14705631)
chr2 (76-156)||(43626405-43626485)
[»] chr4 (4 HSPs)
chr4 (16-164)||(30776142-30776290)
chr4 (76-184)||(9322973-9323081)
chr4 (76-184)||(9334945-9335053)
chr4 (76-184)||(9377452-9377560)
[»] chr1 (3 HSPs)
chr1 (18-164)||(4677469-4677615)
chr1 (18-152)||(15596086-15596220)
chr1 (22-164)||(34465177-34465319)
[»] chr5 (2 HSPs)
chr5 (18-159)||(28220974-28221115)
chr5 (34-164)||(42554116-42554246)
[»] chr8 (1 HSPs)
chr8 (18-155)||(43745851-43745985)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 8630251 - 8630490
Alignment:
Q  14 caaccaacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgctttcatcgttgtgaataatctcaactctgttcttttcttccaacca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  8630251 caaccaacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgccttcatcattgtgaataatctcaactctgttcttttcttccaacca 8630350  T
Q  114 aacagcaacacaagagtaggttgttccaaggtctattcccacagcatgtccatcgtgttttcttgccatgatccttcaagtaaacaaaggaagcttgaat 213  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8630351 aacaccaacacaagaataggttgttccaaggtctattcccacagcatgtccatcgtgttttcttgccatgatccttcaagtaaacaaaggaagcttgaat 8630450  T
Q  214 gaaaagaaaaatttgttgggttagtctcttagggtttatt 253  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8630451 gaaaagaaaaatttgttgggttagtctcttagggtttatt 8630490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 8584615 - 8584436
Alignment:
Q  14 caaccaacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgctttcatcgttgtgaataatctcaactctgttcttttcttccaacca 113  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8584615 caaccaacctttgatcatcggtaaaagcaacaaaggaaggtgtgattttattgccttcatcgttgtgaataatctcaactctgttcttttcttccaacca 8584516  T
Q  114 aacagcaacacaagagtaggttgttccaaggtctattcccacagcatgtccatcgtgttttcttgccatgatccttcaag 193  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||| ||| |||| | | || ||||||||| ||||||    
T  8584515 aacaccaacacaagaataggttgttccaaggtctattcccacagcatttccgtcgtatatcctcgccatgatcgttcaag 8584436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 8647728 - 8647911
Alignment:
Q  18 caacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgctttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaaca 117  Q
    |||||||||||||||||| |||||||| || ||||||||  || | || | || ||| |||||||||||||||||||| || | ||| || | ||| |||    
T  8647728 caacctttgatcatcggtgaaagcaacaaaagaaggtgtagttctgtttccttgatcattgtgaataatctcaactctattgtgttcatcaagccacaca 8647827  T
Q  118 gcaacacaagagtaggttgttccaaggtctattcccacagcatgtccatcgtgttttcttgccatgatccttcaagtaaacaaa 201  Q
    |||||||| || || ||||||||||||||||||||||| ||| |||| ||||||||| | ||||||||| ||||||||||||||    
T  8647828 gcaacacacgaatacgttgttccaaggtctattcccactgcaagtccttcgtgttttttcgccatgatctttcaagtaaacaaa 8647911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 3148394 - 3148564
Alignment:
Q  14 caaccaacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgctttcatcgttgtgaataatctcaactctgttcttttcttccaacca 113  Q
    ||||||||||||||||||| || |||||||| || ||||||||| |||| |||| ||  || ||||||||||||||||||||||| |  || || | |||    
T  3148394 caaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctcaactctgttgtgctcatcgagcca 3148493  T
Q  114 aacagcaacacaagagtaggttgttccaaggtctattcccacagcatgtccatcgtgttttcttgccatga 184  Q
    ||||||||| || || || |||||||||||||| |||||||| |||  ||| ||||  ||| |||||||||    
T  3148494 aacagcaacgcacgaatacgttgttccaaggtcgattcccactgcacatccttcgtacttttttgccatga 3148564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 8655376 - 8655540
Alignment:
Q  18 caacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgctttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaaca 117  Q
    ||||||||||| ||| || |||||||| |  ||||||||  || |||||| || ||| |||||||||||||||||||| || |  || || | ||| |||    
T  8655376 caacctttgataatcagtgaaagcaacaacagaaggtgtagttctattgccttgatcattgtgaataatctcaactctattgtgatcgtcaagccacaca 8655475  T
Q  118 gcaacacaagagtaggttgttccaaggtctattcccacagcatgtccatcgtgttttcttgccat 182  Q
    |||||||| || ||||||||||| ||||||||||| |||||| |||| |||| ||||||||||||    
T  8655476 gcaacacatgaataggttgttccgaggtctattccgacagcacgtccctcgtattttcttgccat 8655540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 6790437 - 6790578
Alignment:
Q  18 caacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgctttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaaca 117  Q
    ||||||||| |||||||| |||||||| || ||||||||| |||| || | ||  || |||||||||||||||||||| || | ||| || | ||| |||    
T  6790437 caacctttggtcatcggtgaaagcaacaaaagaaggtgtggttttgttaccttggtcattgtgaataatctcaactctattgtgttcatcaagccacaca 6790536  T
Q  118 gcaacacaagagtaggttgttccaaggtctattcccacagca 159  Q
     |||||||||| || |||||||| ||||||||||||||||||    
T  6790537 ccaacacaagaatatgttgttcccaggtctattcccacagca 6790578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 7876909 - 7876730
Alignment:
Q  18 caacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgctttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaaca 117  Q
    ||||||||||||||  || |||||||| || ||||||||  || | |||| ||  || ||||||||||| || ||||| || | ||| || | ||| |||    
T  7876909 caacctttgatcattcgtgaaagcaacaaaagaaggtgttgttctgttgccttgttcattgtgaataatttcgactctattgtgttcatcaagccacaca 7876810  T
Q  118 gcaacacaagagtaggttgttccaaggtctattcccacagcatgtccatcgtgttttcttgccatgatccttcaagtaaa 197  Q
    |||||||| || || ||||||||||||||||||||||| ||| |||| |||| |||| | ||||| ||| ||||||||||    
T  7876809 gcaacacaggaatacgttgttccaaggtctattcccaccgcacgtccttcgtattttttcgccataatctttcaagtaaa 7876730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 169
Target Start/End: Complemental strand, 13332221 - 13332074
Alignment:
Q  22 ctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgctttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaacagcaa 121  Q
    |||||||||| | | |||||||| || ||||||||  || |||| | || ||| |||||||||||||||||||| |  | ||| || | ||| |||||||    
T  13332221 ctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttccttgatcattgtgaataatctcaactctttggtgttcatcaagccacacagcaa 13332122  T
Q  122 cacaagagtaggttgttccaaggtctattcccacagcatgtccatcgt 169  Q
    |||| |||||||||||||||||||| |||||||| ||| |||| ||||    
T  13332121 cacatgagtaggttgttccaaggtcgattcccactgcacgtccttcgt 13332074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 10493076 - 10492939
Alignment:
Q  18 caacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgctttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaaca 117  Q
    |||||||||||||| | | |||||||| || ||||||||  || |||| | || ||| ||||||||||| |||||||| |  | ||| || | ||| |||    
T  10493076 caacctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttccttgatcattgtgaataatttcaactctttggtgttcatcaagccataca 10492977  T
Q  118 gcaacacaagagtaggttgttccaaggtctattcccac 155  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  10492976 gcaacacatgagtaggttgttccaagatctattcccac 10492939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 1302338 - 1302528
Alignment:
Q  18 caacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgctttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaaca 117  Q
    |||||||||||||||||| |||||||| || || |||||  |||| |||| ||  |||||||  || ||||| ||||| || |  |  |||| ||| |||    
T  1302338 caacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctctactctattgtgattctccagccacaca 1302437  T
Q  118 gcaacacaagagtaggttgttccaaggtctattcccacagcatgtccatcgtgttttcttgccatgatccttcaagtaaacaaaggaagct 208  Q
    |||||||| || || || ||||||||||||||||| |||||| |||| ||||  ||| | ||||||||| ||||| ||| |||| ||||||    
T  1302438 gcaacacacgaataagtagttccaaggtctattccaacagcacgtccttcgtactttatcgccatgatctttcaaataatcaaaagaagct 1302528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 8668492 - 8668660
Alignment:
Q  18 caacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgctttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaaca 117  Q
    ||||||||| |||| | | |||||||| || |||||||| |||   || | || ||| |||||||||||||||||||| |  | ||  || | ||| |||    
T  8668492 caacctttgttcattgttgaaagcaacaaaagaaggtgttattcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacaca 8668591  T
Q  118 gcaacacaagagtaggttgttccaaggtctattcccacagcatgtccatcgtgttttcttgccatgatc 186  Q
    |||||||| || |||||||||||||| ||||||||||| ||| |||| |||| || | |||||||||||    
T  8668592 gcaacacatgaataggttgttccaagatctattcccactgcacgtccttcgtattcttttgccatgatc 8668660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 208
Target Start/End: Original strand, 8660359 - 8660461
Alignment:
Q  106 tccaaccaaacagcaacacaagagtaggttgttccaaggtctattcccacagcatgtccatcgtgttttcttgccatgatccttcaagtaaacaaaggaa 205  Q
    |||| ||| ||||||||||| || ||||||||||||||||||||||| | |||| |||| ||||  ||| |  |||||||| ||||| ||| |||| |||    
T  8660359 tccagccacacagcaacacacgaataggttgttccaaggtctattccaatagcacgtccttcgtactttatccccatgatcgttcaaataatcaaaagaa 8660458  T
Q  206 gct 208  Q
    |||    
T  8660459 gct 8660461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 8602761 - 8602889
Alignment:
Q  18 caacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgctttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaaca 117  Q
    |||||||| |||||| ||||||||||| || ||||| ||  || | || | || ||| ||||||||||||||  | ||||| ||||  |||  |||||||    
T  8602761 caaccttttatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgccctgttgttttggtcctgccaaaca 8602860  T
Q  118 gcaacacaagagtaggttgttccaaggtc 146  Q
    || ||||| || |||||||||||||||||    
T  8602861 gctacacatgaataggttgttccaaggtc 8602889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 8591425 - 8591496
Alignment:
Q  18 caacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgctttcatcgttgtgaataatctc 89  Q
    ||||||||||||||  ||||||||||| || |||||||| ||| |||| | || ||| ||||||||||||||    
T  8591425 caacctttgatcattagtaaaagcaacaaaagaaggtgtaattctatttccttgatcattgtgaataatctc 8591496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 16661143 - 16660976
Alignment:
Q  16 accaacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgctttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaa 115  Q
    |||||||||||| |||| ||||||||||| || |||||||| ||||| |||| |||||||||||| ||||||||||||||||| || |||||||||||||    
T  16661143 accaacctttgagcatcagtaaaagcaacaaaagaaggtgtaattttgttgccttcatcgttgtggataatctcaactctgtttttctcttccaaccaaa 16661044  T
Q  116 cagcaacacaagagtaggttgttccaaggtctattcccacagcatgtccatcgtgttttcttgccatg 183  Q
    |||||||||| ||||| |||||||| |||||||| |||||| |||| || ||||||||||| ||||||    
T  16661043 cagcaacacatgagtatgttgttcctaggtctatgcccacaacatgcccttcgtgttttctcgccatg 16660976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 16656587 - 16656495
Alignment:
Q  106 tccaaccaaacagcaacacaagagtaggttgttccaaggtctattcccacagcatgtccatcgtgttttcttgccatgatccttcaagtaaac 198  Q
    |||| ||| ||||||||||| || || ||||||||||||||||||||||| ||| |||| || |||||| ||||||| ||| ||||| |||||    
T  16656587 tccatccacacagcaacacatgaataagttgttccaaggtctattcccactgcacgtccttcatgtttttttgccataatctttcaactaaac 16656495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 14705503 - 14705631
Alignment:
Q  31 tcggtaaaagcaacgaaggaaggtgtgattttattgctttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaacagcaacacaagagt 130  Q
    ||||| |||||||| || ||||| ||  || |||||| || |||||||||||| || |||||||  |  | || ||||  ||| || |||||||| ||||    
T  14705503 tcggtgaaagcaacaaaagaaggagttgttctattgccttgatcgttgtgaatgatttcaactcgataatgttgttcctgccatactgcaacacatgagt 14705602  T
Q  131 aggttgttccaaggtctattcccacagca 159  Q
    | ||||| |||||||||||||||||||||    
T  14705603 acgttgtaccaaggtctattcccacagca 14705631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 43626405 - 43626485
Alignment:
Q  76 ttgtgaataatctcaactctgttcttttcttccaaccaaacagcaacacaagagtaggttgttccaaggtctattcccaca 156  Q
    ||||| |||||||| |||||  | ||||| || | ||| ||||||| |||||| || ||||||||||||||||||||||||    
T  43626405 ttgtggataatctctactcttctgttttcatcaagccacacagcaatacaagaatacgttgttccaaggtctattcccaca 43626485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 30776142 - 30776290
Alignment:
Q  16 accaacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgctttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaa 115  Q
    |||||||||||| |||| || |||||||| || ||||||||||||||  ||| |||||||||||| ||||| ||||||||||| || || |||| |||||    
T  30776142 accaacctttgaccatcagtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaa 30776241  T
Q  116 cagcaacacaagagtaggttgttccaaggtctattcccacagcatgtcc 164  Q
    |||| ||||| ||||| ||||||||||||||||| ||||| ||||||||    
T  30776242 cagccacacacgagtacgttgttccaaggtctatccccacggcatgtcc 30776290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 184
Target Start/End: Complemental strand, 9323081 - 9322973
Alignment:
Q  76 ttgtgaataatctcaactctgttcttttcttccaaccaaacagcaacacaagagtaggttgttccaaggtctattcccacagcatgtccatcgtgttttc 175  Q
    |||||||||||||||||||| |  | ||  || | ||| |||||||||||||| |||||||||||||| ||||| ||||| ||| |||| ||||||| |     
T  9323081 ttgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaagatctatacccactgcacgtccttcgtgttctt 9322982  T
Q  176 ttgccatga 184  Q
    |||||||||    
T  9322981 ttgccatga 9322973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 184
Target Start/End: Complemental strand, 9335053 - 9334945
Alignment:
Q  76 ttgtgaataatctcaactctgttcttttcttccaaccaaacagcaacacaagagtaggttgttccaaggtctattcccacagcatgtccatcgtgttttc 175  Q
    |||||||||||||||||||| |  | ||  || | ||| |||||||||||||| |||||||||||||| ||||| ||||| ||| |||| ||||||| |     
T  9335053 ttgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaagatctatacccactgcacgtccttcgtgttctt 9334954  T
Q  176 ttgccatga 184  Q
    |||||||||    
T  9334953 ttgccatga 9334945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 184
Target Start/End: Complemental strand, 9377560 - 9377452
Alignment:
Q  76 ttgtgaataatctcaactctgttcttttcttccaaccaaacagcaacacaagagtaggttgttccaaggtctattcccacagcatgtccatcgtgttttc 175  Q
    |||||||||||||||||||| |  | ||  || | ||| |||||||||||||| |||||||||||||| ||||| ||||| ||| |||| ||||||| |     
T  9377560 ttgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaagatctatacccactgcacgtccttcgtgttctt 9377461  T
Q  176 ttgccatga 184  Q
    |||||||||    
T  9377460 ttgccatga 9377452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 4677615 - 4677469
Alignment:
Q  18 caacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgctttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaaca 117  Q
    ||||||||||||||| ||||||||||| || ||||||||  |||| |||| ||  || |||| ||||||||| |||||||| |  |  |||| ||| |||    
T  4677615 caacctttgatcatcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacaca 4677516  T
Q  118 gcaacacaagagtaggttgttccaaggtctattcccacagcatgtcc 164  Q
    |||||||| || || || |||||||| ||||||||||||||| ||||    
T  4677515 gcaacacatgaataagtagttccaagatctattcccacagcacgtcc 4677469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 15596086 - 15596220
Alignment:
Q  18 caacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgctttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaaca 117  Q
    ||||||||||||||  || |||| ||| || |||||||| ||| | || | ||  || ||||| |||||||| ||||| |||| ||| || | ||| |||    
T  15596086 caacctttgatcattagtgaaagaaacaaaagaaggtgtaattctgtttccttggtcattgtggataatctcgactctattctgttcatcaagccacaca 15596185  T
Q  118 gcaacacaagagtaggttgttccaaggtctattcc 152  Q
    ||||||||||| || ||||||||||||||||||||    
T  15596186 gcaacacaagaatacgttgttccaaggtctattcc 15596220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 34465319 - 34465177
Alignment:
Q  22 ctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgctttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaacagcaa 121  Q
    ||||||||||  ||||||||||| || ||||||||| || | || | ||  || |||| ||||||||| |||||  | | || ||||  ||| || ||||    
T  34465319 ctttgatcatgagtaaaagcaacaaaagaaggtgtggttgtgttaccttggtcattgtcaataatctctactctactgtgttgttcctgccatactgcaa 34465220  T
Q  122 cacaagagtaggttgttccaaggtctattcccacagcatgtcc 164  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||    
T  34465219 cacatgagtaggttgtgccaaggtctattcccacagcacgtcc 34465177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 28220974 - 28221115
Alignment:
Q  18 caacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgctttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaaca 117  Q
    |||||||| ||||||||| |||||||| || ||||| ||  |||| |||| || ||| ||||||||||||||||| || || | ||| ||   ||| |||    
T  28220974 caacctttcatcatcggtgaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatctcaaccctattgtgttcatcttgccacaca 28221073  T
Q  118 gcaacacaagagtaggttgttccaaggtctattcccacagca 159  Q
    |||||||| || || ||||||||||| |||||||||||||||    
T  28221074 gcaacacatgaatacgttgttccaagatctattcccacagca 28221115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 164
Target Start/End: Complemental strand, 42554246 - 42554116
Alignment:
Q  34 gtaaaagcaacgaaggaaggtgtgattttattgctttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaacagcaacacaagagtagg 133  Q
    ||||||||||| || ||||||||  |||| |||| || ||| |||||||||||||||||||| || | ||| ||   ||| |||| |||||| || || |    
T  42554246 gtaaaagcaacaaaagaaggtgttgttttgttgccttgatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacg 42554147  T
Q  134 ttgttccaaggtctattcccacagcatgtcc 164  Q
    |||||||||||||||||||||| ||| ||||    
T  42554146 ttgttccaaggtctattcccactgcacgtcc 42554116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 43745851 - 43745985
Alignment:
Q  18 caacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgctttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaaca 117  Q
    |||||||| || ||| ||||||||||| || |||| |||   ||| |||| || ||| |||||||||||||||||||| || | ||| ||   ||| |||    
T  43745851 caacctttcatgatcagtaaaagcaacaaaagaagttgt---tttgttgccttgatcattgtgaataatctcaactctattttgttcatcttgccacaca 43745947  T
Q  118 gcaacacaagagtaggttgttccaaggtctattcccac 155  Q
    |||||||| || || |||||||||||||||||||||||    
T  43745948 gcaacacacgaatacgttgttccaaggtctattcccac 43745985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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