View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9830_low_16 (Length: 249)

Name: NF9830_low_16
Description: NF9830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9830_low_16
NF9830_low_16
[»] chr5 (19 HSPs)
chr5 (4-249)||(10603883-10604128)
chr5 (15-238)||(10600997-10601220)
chr5 (15-247)||(10741543-10741775)
chr5 (15-181)||(10747859-10748025)
chr5 (15-180)||(10763977-10764142)
chr5 (73-247)||(10580141-10580312)
chr5 (15-181)||(10217593-10217756)
chr5 (15-247)||(10564160-10564392)
chr5 (15-247)||(10610843-10611075)
chr5 (15-198)||(7192187-7192370)
chr5 (17-187)||(10653045-10653215)
chr5 (15-97)||(10717784-10717866)
chr5 (15-229)||(10660929-10661143)
chr5 (39-182)||(9837196-9837339)
chr5 (35-246)||(10558054-10558265)
chr5 (15-246)||(19606709-19606940)
chr5 (15-78)||(11049501-11049564)
chr5 (45-97)||(10589301-10589353)
chr5 (137-181)||(10717864-10717908)
[»] chr6 (5 HSPs)
chr6 (15-181)||(12947843-12948009)
chr6 (15-178)||(12931481-12931644)
chr6 (15-169)||(12906401-12906555)
chr6 (15-169)||(12898781-12898935)
chr6 (15-181)||(12957277-12957443)
[»] chr2 (1 HSPs)
chr2 (15-181)||(17924247-17924413)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 10604128 - 10603883
Alignment:
Q  4 gagaagcataggaggatggtattgttccgttgaaggagttcccttgcaaatgaaggtattctaagcttatgcattcaccaatagttccaggaatctcccc 103  Q
    |||||||| | ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10604128 gagaagcaaaagaggatggtattgttccgttgaatgagttcccttgcaaacgaaggtattctaagcttatgcattcaccaatagttccaggaatctcccc 10604029  T
Q  104 acacaaatgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagt 203  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10604028 acacaaatgattttcagagacatctaaccaatcaatattttttagcatacccacttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagt 10603929  T
Q  204 aaatttgtcaaagaggaaatactaaaaatctctaaaggtatggacc 249  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  10603928 aaatttgtcaaagaggaaatactaaaaatatctaaaggtatggacc 10603883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 10601220 - 10600997
Alignment:
Q  15 gaggatggtattgttccgttgaaggagttcccttgcaaatgaaggtattctaagcttatgcattcaccaatagttccaggaatctccccacacaaatgat 114  Q
    ||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||   |||||||||| ||||||| ||||||||||||||||||||    
T  10601220 gaggatggtattgttccgttgaaagaattctcttgcaaatgaaggtattctaagcttacatattcaccaatggttccagtaatctccccacacaaatgat 10601121  T
Q  115 tctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagtaaatttgtcaa 214  Q
    ||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  10601120 tctcagagacatctagccaatcaatattttttagcatacccacttcttttgttaagctacctctcaatatgtttcgtgacaagtcaagtacatttgtcaa 10601021  T
Q  215 agaggaaatactaaaaatctctaa 238  Q
    ||||||||||||||||||||||||    
T  10601020 agaggaaatactaaaaatctctaa 10600997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 10741543 - 10741775
Alignment:
Q  15 gaggatggtattgttccgttgaaggagttcccttgcaaatgaaggtattctaagcttatgcattcaccaatagttccaggaatctccccacacaaatgat 114  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||| || ||||||||||||| |||| |||||| || ||| | | | |||    
T  10741543 gaggatggtattgttccgctgaaggagttcccttgcaattgaaggtattctaaggttgtgcattcaccaattgttctaggaatatcaccagatagacgat 10741642  T
Q  115 tctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagtaaatttgtcaa 214  Q
    ||| ||| | ||||| |   ||||||||||||| |||||||| |||| |||||| ||||||||||||  ||||  |||||||||| | ||| ||||  ||    
T  10741643 tctcagatagatctagcatgtcaatattttttaacatacccacttctcttggtatgctaccactcaaagtgttatgtgacaagtccaataagtttgataa 10741742  T
Q  215 agaggaaatactaaaaatctctaaaggtatgga 247  Q
    ||| |||| |||||||| ||||| |||||||||    
T  10741743 agaagaaagactaaaaacctctagaggtatgga 10741775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 10747859 - 10748025
Alignment:
Q  15 gaggatggtattgttccgttgaaggagttcccttgcaaatgaaggtattctaagcttatgcattcaccaatagttccaggaatctccccacacaaatgat 114  Q
    ||||||||||||||||| |||||||||||||||||||  |||||||||||||||  | |||| |||||||| |||  |||||| || ||| | | |||||    
T  10747859 gaggatggtattgttccattgaaggagttcccttgcaggtgaaggtattctaaggctgtgcaatcaccaattgttgtaggaatatcaccagatagatgat 10747958  T
Q  115 tctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaa 181  Q
    ||| ||||||||||| |||||||||||||||||| | ||||| |||| |||||||||||||||||||    
T  10747959 tctcagagacatctagccaatcaatattttttagtaaacccacttctcttggtaagctaccactcaa 10748025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 10763977 - 10764142
Alignment:
Q  15 gaggatggtattgttccgttgaaggagttcccttgcaaatgaaggtattctaagcttatgcattcaccaatagttccaggaatctccccacacaaatgat 114  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||| || ||||||||||||| |||  |||||| || ||| | | |||||    
T  10763977 gaggatggtattgttccgctgaaggagttcccttgcaattgaaggtattctaaggttgtgcattcaccaattgttttaggaatatcaccagatagatgat 10764076  T
Q  115 tctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactca 180  Q
    ||| ||| | ||| | |   ||||||||||||| |||||||| |||| ||||||||||||||||||    
T  10764077 tctcagatagatccagcatgtcaatattttttaacatacccacttctcttggtaagctaccactca 10764142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 73 - 247
Target Start/End: Complemental strand, 10580312 - 10580141
Alignment:
Q  73 tgcattcaccaatagttccaggaatctccccacacaaatgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagct 172  Q
    ||||||||||||| |||||| |||| |||||| | ||| |||||| ||||||||||| ||  |||||| ||||||||||||||| |||||| ||||| ||    
T  10580312 tgcattcaccaatggttccaagaatgtccccaaataaacgattctcagagacatctaccccctcaatactttttagcatacccacttctttaggtaatct 10580213  T
Q  173 accactcaatttgtttcgtgacaagtcaagtaaatttgtcaaagaggaaatactaaaaatctctaaaggtatgga 247  Q
    | || ||||  |||||||||| |||||||||   |||| ||||| |||||||||||| ||||||||| |||||||    
T  10580212 atcattcaacatgtttcgtgaaaagtcaagt---tttgacaaaggggaaatactaaagatctctaaacgtatgga 10580141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 10217593 - 10217756
Alignment:
Q  15 gaggatggtattgttccgttgaaggagttcccttgcaaatgaaggtattctaagcttatgcattcaccaatagttccaggaatctccccacacaaatgat 114  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||  |   |||||| || ||| ||| || ||    
T  10217593 gaggatggtattgttccattgaaggagttcccttgcaaatgaaggtattccaagcttacgcattcaccaatgat---aggaatatcaccaaacagattat 10217689  T
Q  115 tctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaa 181  Q
    | | ||| ||||||| |  | |||||||||||||||| || | |||| |||| |||||||| |||||    
T  10217690 tttcagaaacatctagcttaccaatattttttagcatgccaacttctcttggcaagctaccgctcaa 10217756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 247
Target Start/End: Complemental strand, 10564392 - 10564160
Alignment:
Q  15 gaggatggtattgttccgttgaaggagttcccttgcaaatgaaggtattctaagcttatgcattcaccaatagttccaggaatctccccacacaaatgat 114  Q
    ||||| |||||||||| |||||||| ||||||||||||   ||| |||||||||||||| ||||| |||||   |  |||||| || ||| | |||||||    
T  10564392 gaggacggtattgttctgttgaaggcgttcccttgcaacataagatattctaagcttatacattcgccaatttctgtaggaatatcaccagataaatgat 10564293  T
Q  115 tctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagtaaatttgtcaa 214  Q
    ||| ||||||||||||    |||| ||||||||  | ||||| |||| |||||||||||||||||||   |||  |||||||||  | ||| ||||| ||    
T  10564292 tcttagagacatctaatatttcaagattttttaagacacccagttctcttggtaagctaccactcaaagagttatgtgacaagttcaataagtttgttaa 10564193  T
Q  215 agaggaaatactaaaaatctctaaaggtatgga 247  Q
    ||| |||| |||||||| ||||| |||||||||    
T  10564192 agaagaaagactaaaaacctctagaggtatgga 10564160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 247
Target Start/End: Complemental strand, 10611075 - 10610843
Alignment:
Q  15 gaggatggtattgttccgttgaaggagttcccttgcaaatgaaggtattctaagcttatgcattcaccaatagttccaggaatctccccacacaaatgat 114  Q
    ||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||| ||||| ||||||||||  |||| |||||  |    | | |  ||||    
T  10611075 gaggaaggtattgttccattgaaggagttaccttgcaaaagaaggtattctaaacttatacattcaccaactgttctaggaagataagaagatagttgat 10610976  T
Q  115 tctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagtaaatttgtcaa 214  Q
    ||| ||| ||||||| |  || |||||||||||||||||||| |||| |||||||||||||||||||   |||  | |||||||  | ||||||||  ||    
T  10610975 tctcagatacatctagcatattaatattttttagcatacccacttctcttggtaagctaccactcaaagagttatgcgacaagttcaataaatttgataa 10610876  T
Q  215 agaggaaatactaaaaatctctaaaggtatgga 247  Q
    | |  ||| | ||||||||||||||||||||||    
T  10610875 ataaaaaagattaaaaatctctaaaggtatgga 10610843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 7192370 - 7192187
Alignment:
Q  15 gaggatggtattgttccgttgaaggagttcccttgcaaatgaaggtattctaagcttatgcattcaccaatagttccaggaatctccccacacaaatgat 114  Q
    ||||||||||| ||||||||||||||||| |||||||||   ||||||||||||| ||||||||| ||||| | || |||||| || ||| | | | |||    
T  7192370 gaggatggtatggttccgttgaaggagtttccttgcaaaaagaggtattctaagcgtatgcattcgccaatggctctaggaatgtcaccagatagaagat 7192271  T
Q  115 tctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaatttgtttcgtgacaagt 198  Q
    |||  |||||||||| |   |  ||| ||||||||||||||| |||| |||||| |||||||||||||  ||||| ||||||||    
T  7192270 tctccgagacatctagcttgttgatactttttagcatacccacttctcttggtaggctaccactcaatgagtttcttgacaagt 7192187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 10653045 - 10653215
Alignment:
Q  17 ggatggtattgttccgttgaaggagttcccttgcaaatgaaggtattctaagcttatgcattcaccaatagttccaggaatctccccacacaaatgattc 116  Q
    |||||| || ||||||||||| |||||||||||||||  |||||||||||||  ||||||||||||||| |||| ||||||||| ||  | | || |||     
T  10653045 ggatggaatggttccgttgaacgagttcccttgcaaagaaaggtattctaagactatgcattcaccaatggttctaggaatctcacctgatagataatta 10653144  T
Q  117 tgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaatttgtt 187  Q
    |  |||| |||||||  ||  |||||| |||||||||||| |||| | |||||||||||||||||| ||||    
T  10653145 tcggagatatctaactcattgatatttcttagcatacccacttctctcggtaagctaccactcaatgtgtt 10653215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 10717784 - 10717866
Alignment:
Q  15 gaggatggtattgttccgttgaaggagttcccttgcaaatgaaggtattctaagcttatgcattcaccaatagttccaggaat 97  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||| ||||| ||||| |||||||||||||| |||||||||||    
T  10717784 gaggatggtattgttccattgatggagttcccttccaaatgaagatattccaagctcatgcattcaccaatggttccaggaat 10717866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 229
Target Start/End: Original strand, 10660929 - 10661143
Alignment:
Q  15 gaggatggtattgttccgttgaaggagttcccttgcaaatgaaggtattctaagcttatgcattcaccaatagttccaggaatctccccacacaaatgat 114  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||||   ||||||  ||||||||||||||| ||| | ||||| || ||| | | || ||    
T  10660929 gaggatggtatggttccgttgaaagagttcccttgcaaataaaggctatctaagactatgcattcaccaatggttactggaatttcaccagatagataat 10661028  T
Q  115 tctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagtaaatttgtcaa 214  Q
    | |  |||||||||| |   |  ||| || ||||  |||||| |||| |||||| |||||||||||||  ||||  ||||||||  ||||| ||||| ||    
T  10661029 tatctgagacatctagcttgttgatacttattagtttacccacttctattggtaggctaccactcaatgagttttttgacaagttcagtaagtttgttaa 10661128  T
Q  215 agaggaaatactaaa 229  Q
    |||||||| ||||||    
T  10661129 agaggaaagactaaa 10661143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 182
Target Start/End: Original strand, 9837196 - 9837339
Alignment:
Q  39 gagttcccttgcaaatgaaggtattctaagcttatgcattcaccaatagttccaggaatctccccacacaaatgattctgagagacatctaaccaatcaa 138  Q
    |||||||| || || |||||||||||||| ||||||||||||||||| |||   ||||| || ||  ||| |||||| | ||||||||||| |  || ||    
T  9837196 gagttcccctgtaagtgaaggtattctaaacttatgcattcaccaattgttattggaatgtcacccgacagatgattttcagagacatctagcttatgaa 9837295  T
Q  139 tattttttagcatacccatttcttttggtaagctaccactcaat 182  Q
    |||||||||||| ||||| ||| |  ||||| ||||||||||||    
T  9837296 tattttttagcaaacccacttcatcaggtaaactaccactcaat 9837339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 246
Target Start/End: Complemental strand, 10558265 - 10558054
Alignment:
Q  35 gaaggagttcccttgcaaatgaaggtattctaagcttatgcattcaccaatagttccaggaatctccccacacaaatgattctgagagacatctaaccaa 134  Q
    |||||| || |||||||||  |||||||||||||||| |||||| | |||| |||  |||||| || ||| |||||| ||||| ||||| ||||| |  |    
T  10558265 gaaggaatttccttgcaaaaaaaggtattctaagcttttgcattgatcaatggttataggaatttcaccagacaaattattctcagagaaatctagctta 10558166  T
Q  135 tcaatattttttagcatacccatttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagtaaatttgtcaaagaggaaatactaaaaatct 234  Q
    | ||||||||||||| |||||| |||    | || | | |||||||||  |||| |||||||||| ||| | ||||  || |||||||||||||||| ||    
T  10558165 ttaatattttttagcctacccacttcaacagataggtttccactcaatgagttttgtgacaagtccagtgagtttgataatgaggaaatactaaaaacct 10558066  T
Q  235 ctaaaggtatgg 246  Q
    | || |||||||    
T  10558065 ccaagggtatgg 10558054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 19606709 - 19606940
Alignment:
Q  15 gaggatggtattgttccgttgaaggagttcccttgcaaatgaaggtattctaagcttatgcattcaccaatagttccaggaatctccccacacaaatgat 114  Q
    |||||||||||  ||||||  |||||||||||||| |||| ||| |||||||||||||||||||||||||| ||| ||| ||| |  ||| | |  ||||    
T  19606709 gaggatggtatgattccgtgaaaggagttcccttgaaaataaagatattctaagcttatgcattcaccaatggtttcagaaatgttaccagaaagttgat 19606808  T
Q  115 tctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagtaaatttgtcaa 214  Q
    | | ||||||||||||   ||| ||  || |||||||||  | |||||| |||||| | ||||| |||  ||||  |||||| || |||||  |||  ||    
T  19606809 tgtcagagacatctaaggtatctattgttgttagcatactgacttctttcggtaagttgccactgaatgagttttttgacaaatccagtaatattgataa 19606908  T
Q  215 agaggaaatactaaaaatctctaaaggtatgg 246  Q
    |||||||| || ||||| |||||| |||||||    
T  19606909 agaggaaagacgaaaaacctctaagggtatgg 19606940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 11049501 - 11049564
Alignment:
Q  15 gaggatggtattgttccgttgaaggagttcccttgcaaatgaaggtattctaagcttatgcatt 78  Q
    ||||| ||||||||||| ||||||||||||||||||||  |||||||||| ||||||| |||||    
T  11049501 gaggacggtattgttccattgaaggagttcccttgcaagagaaggtattcgaagcttacgcatt 11049564  T

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Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 10589301 - 10589353
Alignment:
Q  45 ccttgcaaatgaaggtattctaagcttatgcattcaccaatagttccaggaat 97  Q
    |||||||||||||||||||||||| ||||||| || ||||| ||||| |||||    
T  10589301 ccttgcaaatgaaggtattctaagtttatgcaatccccaatggttcctggaat 10589353  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 10717864 - 10717908
Alignment:
Q  137 aatattttttagcatacccatttcttttggtaagctaccactcaa 181  Q
    ||||||||||| ||||| || |||| |||||||||||||||||||    
T  10717864 aatattttttaacatactcacttctcttggtaagctaccactcaa 10717908  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 12948009 - 12947843
Alignment:
Q  15 gaggatggtattgttccgttgaaggagttcccttgcaaatgaaggtattctaagcttatgcattcaccaatagttccaggaatctccccacacaaatgat 114  Q
    ||||| ||||||||||||||||||||||||| |||||||||||  |||||||||||| | |||||||||||   || |||||| || ||| | | |||||    
T  12948009 gaggacggtattgttccgttgaaggagttcctttgcaaatgaatatattctaagcttgtacattcaccaatttctctaggaatatcaccagatagatgat 12947910  T
Q  115 tctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaa 181  Q
    ||| ||||||||||||    ||||||||||||| |||||||| |||| |||||||||||||||||||    
T  12947909 tctcagagacatctaatgcttcaatattttttaacatacccacttctcttggtaagctaccactcaa 12947843  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 178
Target Start/End: Complemental strand, 12931644 - 12931481
Alignment:
Q  15 gaggatggtattgttccgttgaaggagttcccttgcaaatgaaggtattctaagcttatgcattcaccaatagttccaggaatctccccacacaaatgat 114  Q
    ||||| ||||||||||||||||||||||||| |||||||||||  |||||||||||| | |||||||||||   || |||||| || ||| | | |||||    
T  12931644 gaggacggtattgttccgttgaaggagttcctttgcaaatgaatatattctaagcttgtacattcaccaatttctctaggaatatcaccagatagatgat 12931545  T
Q  115 tctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccact 178  Q
    ||| ||||||||||||    ||||||||||||| |||||||| |||| ||||||||||||||||    
T  12931544 tctcagagacatctaatgcttcaatattttttaacatacccacttctcttggtaagctaccact 12931481  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 12906555 - 12906401
Alignment:
Q  15 gaggatggtattgttccgttgaaggagttcccttgcaaatgaaggtattctaagcttatgcattcaccaatagttccaggaatctccccacacaaatgat 114  Q
    ||||| |||||||||||||| |||||||||| |||||||||||  |||||||||||| | |||||||||||   ||  ||||| || ||| | | |||||    
T  12906555 gaggacggtattgttccgttaaaggagttcctttgcaaatgaatatattctaagcttgtacattcaccaatttctctcggaatatcaccagatagatgat 12906456  T
Q  115 tctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaa 169  Q
    ||| ||||||||||||     |||||||||||| |||||||| |||| |||||||    
T  12906455 tctcagagacatctaattctgcaatattttttaacatacccacttctcttggtaa 12906401  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 12898935 - 12898781
Alignment:
Q  15 gaggatggtattgttccgttgaaggagttcccttgcaaatgaaggtattctaagcttatgcattcaccaatagttccaggaatctccccacacaaatgat 114  Q
    ||||| ||||||||||||||||||||||||| ||||||| |||  ||||||| |||| | |||||||||||   |   ||||| || ||| | | |||||    
T  12898935 gaggacggtattgttccgttgaaggagttcctttgcaaaagaatatattctatgcttgtacattcaccaatttctatcggaatatcaccagatagatgat 12898836  T
Q  115 tctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaa 169  Q
    ||  |||||||||||| |  | ||||||||||| |||||||| |||| |||||||    
T  12898835 tcccagagacatctaatcctttaatattttttaacatacccacttctcttggtaa 12898781  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 12957443 - 12957277
Alignment:
Q  15 gaggatggtattgttccgttgaaggagttcccttgcaaatgaaggtattctaagcttatgcattcaccaatagttccaggaatctccccacacaaatgat 114  Q
    ||||| ||||||||||| ||||||  ||||| ||||||| |||  ||||||||| || | |||||||||||   ||  ||||| || ||| | | |||||    
T  12957443 gaggacggtattgttccattgaagatgttcctttgcaaacgaatatattctaagattgtacattcaccaatttctctcggaatatcaccagatagatgat 12957344  T
Q  115 tctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaa 181  Q
    ||| ||||||||||||    ||||||||||||| |||||||| |||| |||||||| |||| |||||    
T  12957343 tctcagagacatctaaatcttcaatattttttaacatacccacttctgttggtaaggtaccgctcaa 12957277  T

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Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 17924247 - 17924413
Alignment:
Q  15 gaggatggtattgttccgttgaaggagttcccttgcaaatgaaggtattctaagcttatgcattcaccaatagttccaggaatctccccacacaaatgat 114  Q
    ||||| ||||||||||||||||||||||||| |||||||||||  |||||||||||||| |||||||||||   ||  ||||| || ||| | | |||||    
T  17924247 gaggacggtattgttccgttgaaggagttcctttgcaaatgaatatattctaagcttatacattcaccaatttctctcggaatatcaccagatagatgat 17924346  T
Q  115 tctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaa 181  Q
    ||| ||||||||||||    ||||||||||||| ||||| || |||| |||||||| ||||||||||    
T  17924347 tctcagagacatctaattcttcaatattttttaacatactcacttctcttggtaaggtaccactcaa 17924413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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