View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9830_low_17 (Length: 248)
Name: NF9830_low_17
Description: NF9830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9830_low_17 |
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| [»] scaffold0413 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 109 - 205
Target Start/End: Original strand, 14490179 - 14490275
Alignment:
| Q |
109 |
tttcttccggttagctaaaccatgcttttccaaactttaacatctcattattactgttaatcctctgatattcagagttagttcttttaagatatga |
205 |
Q |
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| T |
14490179 |
tttctttcggttagctaaaccatgcttttccaaaccttaacatctcattattactattaatcctctgatattcaaagttagttcttttaagatatga |
14490275 |
T |
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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 14490287 - 14490325
Alignment:
| Q |
200 |
atatgatcatcgcttctctgtttggattcaacccctatg |
238 |
Q |
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| T |
14490287 |
atatgatcatcgcttctctgtttggattcaacccctatg |
14490325 |
T |
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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 10752456 - 10752375
Alignment:
| Q |
1 |
ggcacatattagctactctacatatttcaattccctcacactcagttgg-ctttctcactcattcaattacacgagccattc |
81 |
Q |
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| T |
10752456 |
ggcacatattagctactctacatatttcaattccctcaccctcagttggtttttctcactcattcaattacacgagccattc |
10752375 |
T |
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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 229
Target Start/End: Original strand, 9742098 - 9742273
Alignment:
| Q |
54 |
ctcactcattcaattacacgagccattccactcctctctaattccttgcgtcca-ttttcttccggttagctaaaccatgcttttccaaactttaacatc |
152 |
Q |
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| T |
9742098 |
ctcactcgttcaattacacgagccactgcaatcctctctaattccttgcatccatttttcttctggttagataaacctttcttttccaaac-ctaacatt |
9742196 |
T |
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| Q |
153 |
tcattattactgttaatcctctgatattcagagttagttcttttaagatatgatcatcgcttctctgtttggattca |
229 |
Q |
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| T |
9742197 |
ccattattactactaatcctcttatattcaaatttagttcttctaggatatgattaaggcttctctctttggcttca |
9742273 |
T |
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Target: scaffold0413 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0413
Description:
Target: scaffold0413; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 8079 - 8155
Alignment:
| Q |
1 |
ggcacatattagctactctacatatttcaattccctcacactcagttggctttctcactcattcaattacacgagcc |
77 |
Q |
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| T |
8079 |
ggcacatattagctaccctacatatttcaattccctcaccctcaattggttttctcactcattcaattacacgagcc |
8155 |
T |
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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 206
Target Start/End: Complemental strand, 31519767 - 31519615
Alignment:
| Q |
54 |
ctcactcattcaattacacgagccattccactcctctctaattccttgcgtccatt-ttcttccggttagctaaaccatgcttttccaaactttaacatc |
152 |
Q |
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| T |
31519767 |
ctcactcgttcaattacacgagccactgcaatcctctctaattccttgcatccattcttcttctggttagataaacctttcttttccaaa-actaacatt |
31519669 |
T |
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| Q |
153 |
tcattattactgttaatcctctgatattcagagttagttcttttaagatatgat |
206 |
Q |
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| T |
31519668 |
ccattattactactaatcctcttatattcaaatttagttcttctaggatatgat |
31519615 |
T |
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