View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9830_low_20 (Length: 240)
Name: NF9830_low_20
Description: NF9830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9830_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 24233822 - 24234027
Alignment:
| Q |
20 |
tcttcaggttaacccttcagatgttataattttggaaggcatccttgttttccacgatcctcgtgttcgggagttgatgaatatgaagatatttgttgac |
119 |
Q |
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| T |
24233822 |
tcttcaggttaacccttcagatgttataattttggaaggcatccttgttttccacgatcctcgtgttcgggagttgatgaatatgaagatatttgttgac |
24233921 |
T |
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| Q |
120 |
acaggtccttttatttcctttagttcatattttttattgtgtatgtttcacagagcatttattaatttgtatgcaatcttttgttagattaattttattt |
219 |
Q |
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| T |
24233922 |
acaggtccttttatttcctttagttcatattttttattgtgtatgtttcacacagcatttgttaatttgtatgcaatcttttgttagattaattttattt |
24234021 |
T |
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| Q |
220 |
catctc |
225 |
Q |
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|||||| |
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| T |
24234022 |
catctc |
24234027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 42275357 - 42275460
Alignment:
| Q |
24 |
caggttaacccttcagatgttataattttggaaggcatccttgttttccacgatcctcgtgttcgggagttgatgaatatgaagatatttgttgacacag |
123 |
Q |
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||||| || ||| |||||||||||||||||||||||||||||||||| || ||||| ||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
42275357 |
caggtaaatcctgcagatgttataattttggaaggcatccttgtttttcatgatccacgtgtcagggcattgatgaatatgaagatatttgttgacacag |
42275456 |
T |
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| Q |
124 |
gtcc |
127 |
Q |
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|||| |
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| T |
42275457 |
gtcc |
42275460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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