View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9830_low_25 (Length: 226)
Name: NF9830_low_25
Description: NF9830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9830_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 5809573 - 5809385
Alignment:
| Q |
25 |
tggaggagcttgcgaagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgc |
124 |
Q |
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| T |
5809573 |
tggaggagcttgcgaagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgtagaacttgccttatggtgccaccgaaaatgaacttgc |
5809474 |
T |
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| Q |
125 |
aaagatttttgggaaatttggtagtttggataaaataattctcgcct--acaaaaacattggccttggtatttttcctctctccttctt |
211 |
Q |
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| T |
5809473 |
aaagattttggggaaatttggtagtttggataaaataattctcgcctcgacaaaaacattggccttggtatttttcctctctccttctt |
5809385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 25 - 208
Target Start/End: Complemental strand, 37755004 - 37754820
Alignment:
| Q |
25 |
tggaggagcttgcgaagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgc |
124 |
Q |
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| T |
37755004 |
tggaggagcttgtgaattgtaaagttgatggcgtgaaaagaagtaaccatgtacttttagcaaaaaatttgccatatggtgctacggaaaatgaacttgc |
37754905 |
T |
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| Q |
125 |
aaagatttttgggaaatttggtagtttggataaaataattctcgcct--acaaaaacattggccttggtatttttcctctctcctt |
208 |
Q |
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| T |
37754904 |
aaagatgtttgggaaatttggtagtttggataaaataattctcccctcgacaaaaacattggccctggtatttttcc-ctctcctt |
37754820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 25 - 208
Target Start/End: Complemental strand, 37760978 - 37760794
Alignment:
| Q |
25 |
tggaggagcttgcgaagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgc |
124 |
Q |
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| T |
37760978 |
tggaggagcttgtgaattgtaaagttgatggcgtgaaaagaagtaaccatgtacttttagcaaaaaatttgccatatggtgctacggaaaatgaacttgc |
37760879 |
T |
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| Q |
125 |
aaagatttttgggaaatttggtagtttggataaaataattctcgcct--acaaaaacattggccttggtatttttcctctctcctt |
208 |
Q |
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| T |
37760878 |
aaagatgtttgggaaatttggtagtttggataaaataattctcccctcgacaaaaacattggccctggtatttttcc-ctctcctt |
37760794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 37739152 - 37738980
Alignment:
| Q |
25 |
tggaggagcttgcgaagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgc |
124 |
Q |
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||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||| || ||||| |||||||| || |||||||| ||||| |
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| T |
37739152 |
tggaggagcatgcgaagggtaaagttgatggcaggaaaagaagtaaccatgtacttttagcgaaaaatttgccatatggtgctacggaaaatgatcttgc |
37739053 |
T |
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| Q |
125 |
aaagatttttgggaaatttggtagtttggataaaataattctcgcct--acaaaaacattggccttggtattt |
195 |
Q |
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| T |
37739052 |
aaagatgtttgggaaatttggtagtttggataaaataattctgccctcgacaaaaacattggccctggtattt |
37738980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 25 - 199
Target Start/End: Original strand, 38605699 - 38605875
Alignment:
| Q |
25 |
tggaggagcttgcgaagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgc |
124 |
Q |
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|||||||||||||| ||||||||||| ||||| | |||||||||||||||||| ||||||| || || ||||| |||||||| || |||||||||||||| |
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| T |
38605699 |
tggaggagcttgcggagggtaaagtttatggcgttaaaagaagtaaccatgtacttttagcaaaaaatttgccatatggtgctacggaaaatgaacttgc |
38605798 |
T |
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| Q |
125 |
aaagatttttgggaaatttggtagtttggataaaataattctcgcct--acaaaaacattggccttggtatttttcc |
199 |
Q |
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| T |
38605799 |
agagatgtttgggaaatttggtagtttggataaaataattctcccctcgacaagaacattggccctggtatttttcc |
38605875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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