View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9830_low_3 (Length: 562)
Name: NF9830_low_3
Description: NF9830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9830_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Complemental strand, 54471782 - 54471229
Alignment:
| Q |
1 |
tgatgaatctggtggagacgaattttgagcgtctggtcctggagaagattcttgggaaatagaagacattgttataaagaatgatctgaagaagtcacac |
100 |
Q |
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| T |
54471782 |
tgatgaatctggtggagacgaattttgagcgtctggtcctggagaagattcttgggaaatagaagacattgttataaagaatgatctgaagaagtcacac |
54471683 |
T |
|
| Q |
101 |
tcagctccctcaaatattgaccccgatcgatcatgtattctcaaacctacctgtaataataaaatatgttagaataacacatgttcatcttattgcatgg |
200 |
Q |
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| T |
54471682 |
tcagctccctcaaatattgaccccgatcgatcatgtattctcaaacctacctgtaataataaaatatgttagtataacacatgttcatcttattgcatgg |
54471583 |
T |
|
| Q |
201 |
atctaattagttagttatttttgaaagagagaga--------------ttaagaagaagggat-aatgtaatgtaatgttaccttataagggtgagagaa |
285 |
Q |
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| T |
54471582 |
atctaa---gttagttatttttgaaagagagagagagagagagagagattaagaagaagggattaatgaaatttaatgttaccttataagg-tgagagaa |
54471487 |
T |
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| Q |
286 |
aaggnnnnnnnnnnnnnnnnnnttctcaaaagaaagcgatgaccaaggtgaatgtgcatggtaatagatacacccagaagaaaacgtgtttcttttccaa |
385 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54471486 |
aagggcaggaggaggaggaggattctcaaaagaaagcgatgaccaaggtga-tgtgcatggtaatagatacacccagaagaaaacgtgtttcttttccaa |
54471388 |
T |
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| Q |
386 |
ctcacctctcctacaagcaactatttctctatttttaacatgctatatgcttttttctatctgtcacttactaattttatactgtaggtagttataaact |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54471387 |
ctcacctctcctacaagcaactatttctctatttttaacatgctatatgcttttttctatctgtcacttactaattttatactgtaggtagttataaact |
54471288 |
T |
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| Q |
486 |
ctttgttgagtgctaaacaaaatttaatcttaatcaaaacattggtcatcacgtgtgtt |
544 |
Q |
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| T |
54471287 |
ctttgttgagtgctaaacaaaatttaatcttaatcaaaacattggtcatcacgtgtgtt |
54471229 |
T |
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