View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9830_low_4 (Length: 509)
Name: NF9830_low_4
Description: NF9830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9830_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 44 - 264
Target Start/End: Original strand, 36961956 - 36962176
Alignment:
| Q |
44 |
ttggaacatgttcttttcatgtttaacaaaagaacatgtttgtagaaggtgttatgaatttctagtttatggattgaggtcattcatttggatgacaaat |
143 |
Q |
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| T |
36961956 |
ttggaacatgttcttttcatgtttaacaaaagaacatgtttgtagaaggtgttttgaatttctagtttatggattgaggtcattcatttggatgacaaat |
36962055 |
T |
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| Q |
144 |
aaaagcatatcttttgaaaagagtagtgatatatttgaacaaccatttgaaataacttttttctctattttcattggtcaaaagagatgttatttctcga |
243 |
Q |
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| T |
36962056 |
aaaagcatatcttttgaaaagagtagtgatatatttgaacaaccatttgaaataacttttttctctattttcattggtcaaaagagatgttatttctcga |
36962155 |
T |
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| Q |
244 |
ttggaaatgttatttgttggg |
264 |
Q |
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| T |
36962156 |
ttggaaatgttatttgttggg |
36962176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 299 - 383
Target Start/End: Original strand, 36962228 - 36962312
Alignment:
| Q |
299 |
atagctcaatcatgccttagatggggcatgcaattgatatttcacaattatccagggtctgatcttgatggagttaattttccct |
383 |
Q |
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| T |
36962228 |
atagctcaatcatgccttggatggggcatgcaattgatatttcagaattatccagggtctgatcttgatggagttaattttccct |
36962312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 36961885 - 36961928
Alignment:
| Q |
5 |
agtatggagttgctattaacatttaactggttaggttggttgga |
48 |
Q |
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| T |
36961885 |
agtatggaattgctattaacatttaactggttaggttggttgga |
36961928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 4209461 - 4209517
Alignment:
| Q |
173 |
tatatttgaacaaccatttgaaataa---cttttttctctattttcattggtcaaaa |
226 |
Q |
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| T |
4209461 |
tatatttgaacaaccatttgagataatttcttttttttctcttttcattggtcaaaa |
4209517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 32171032 - 32171087
Alignment:
| Q |
174 |
atatttgaacaaccatttgaaataa---cttttttctctattttcattggtcaaaa |
226 |
Q |
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| T |
32171032 |
atatttgaacaaccatttgagacaatttcttttttctctcttttcattggtcaaaa |
32171087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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