View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9830_low_6 (Length: 427)

Name: NF9830_low_6
Description: NF9830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9830_low_6
NF9830_low_6
[»] chr5 (1 HSPs)
chr5 (16-418)||(3980482-3980883)
[»] chr4 (1 HSPs)
chr4 (16-418)||(40862509-40862908)
[»] chr2 (1 HSPs)
chr2 (16-418)||(21997491-21997900)


Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Original strand, 3980482 - 3980883
Alignment:
Q  16 tcaaaatcattatcttctccctctcatgcgcaaccatcatctccctctcagataaaaaaccaccatatcggatctaaaacaaacaggttgaagaaaccca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||    
T  3980482 tcaaaatcattatcttctccctctcatgcgcaaccatcatctccctctcagataaaaa-ctaccctatcagatctaaaacaaacaggttgaagaaaccca 3980580  T
Q  116 tcagatctaagctaaactcatgagagaatggagttgcgatttgaaactaagccggagacgcaacaagaacgaccacaatcgtcatcgaaataatggctct 215  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  3980581 tcagatttaagccaaactcatgagagaatggagttgcgatttgaaactaagccggagacgcaacgagaacgactacaatcgtcatcgaaataatggctct 3980680  T
Q  216 cagaaatcatgaatcctccaactacaaccaccaccaccataaagataagcacctttctcccttgagacgacgatacgcaagaccaacctcaaacaataat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3980681 cagaaatcatgaatcctccaactacaaccaccaccaccataaagataagcacctttctcccttgagacgacgatacgcaagaccaacctcaaacaataat 3980780  T
Q  316 gtcagaagtcaaacgccctgtcgttgattcaattgtcgacaaaaaataagttttactgaattttgttgccgtcgctgcggtaatcttttctgggctgaac 415  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  3980781 gtcagaagtcaaacgccttgtcgttgattcaattgtcgacagaaaataagttttaccgaattttgttgccgtcgctgcggtaatcttttctaggctgaac 3980880  T
Q  416 acc 418  Q
    |||    
T  3980881 acc 3980883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Original strand, 40862509 - 40862908
Alignment:
Q  16 tcaaaatcattatcttctccctctcatgcgcaaccatcatctccctctcagataaaa-aaccaccatatcggatctaaaacaaacaggttgaagaaaccc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  40862509 tcaaaatcattatcttctccctctcatgcgcaaccatcatctccctctcagataaaaaaaccaccttatcggatctaaaacaaacaggttgaagaaaccc 40862608  T
Q  115 atcagatctaagctaaactcatgagagaatggagttgcgatttgaaactaagccggagacgcaacaagaacgaccacaatcgtcatcgaaataatggctc 214  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  40862609 atcagatctaagccaaactcatgagagaatggagttgcgatttgaaactaagccggagacgcaacgagaacgaccacaatcgtcatcgaaataatggcta 40862708  T
Q  215 tcagaaatcatgaatcctccaactacaaccaccaccaccataaagataagcacctttctcccttgagacgacgatacgcaagaccaacctcaaacaataa 314  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40862709 tcagaaatcatgaatcctccaactaca---accaccaccataaagataagcacctttctcccttgagacgacgatac-caagaccaacctcaaacaataa 40862804  T
Q  315 tgtcagaagtcaaacgccctgtcgttgattcaattgtcgacaaaaaataagttttactgaattttgttgccgtcgctgcggtaatcttttctgggctgaa 414  Q
    |||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||    
T  40862805 tgtcagaagtcaaacgccctgtagttgattcaattgtagacagaaaataagttttaccgaattttgtcgtcgtcgctgcggtaatcttttctgggctgaa 40862904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 418
Target Start/End: Complemental strand, 21997900 - 21997491
Alignment:
Q  16 tcaaaatcattatcttctccctctcatgcgcaaccatcatctccctctcagataaaaaa--ccaccatatcggatctaaaacaaacaggttgaagaaacc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||| | |||||||||||||||||||||||||||    
T  21997900 tcaaaatcattatcttctccctctcatgcgcaaccatcatctccctctcagataaaaaaaaccaccctattgtatctaaaacaaacaggttgaagaaacc 21997801  T
Q  114 catcagatctaagctaaactcatgagagaatggagttgcgatttgaaactaagccggagacgcaacaagaacgaccacaatcgtcatcgaaataatggct 213  Q
    ||| |||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||| |    
T  21997800 cataagatctaagccaaactcaagagagaatggagttgcgatttgcaactaagccggagacgcaatgagaacgaccacaatcgtcatcgaaataatggtt 21997701  T
Q  214 ctcagaaatcatgaatcctccaactacaaccaccaccacca------taaagataagcacctttctcccttgagacgacgatacgcaagaccaacctcaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||      ||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  21997700 ctcagaaatcatgaatcctccaactacaaccaccaccaccaccaccgtaaagataa-cacctttctcccttgagacgccgatacgcaagaccaacctcaa 21997602  T
Q  308 acaataatgtcagaagtcaaacgccctgtcgttgattcaattgtcgacaaaaaataagttttactgaattttgttgccgtcgctgcggtaatcttttctg 407  Q
    |||||| ||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21997601 acaatattgtcaaaagtcaaactccctgtcgttgattcaattgtcgacagaaaataagttttaccgaattttgttgccgtcgctgcggtaatcttttctg 21997502  T
Q  408 ggctgaacacc 418  Q
    |||||||||||    
T  21997501 ggctgaacacc 21997491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University