View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9831_high_3 (Length: 376)
Name: NF9831_high_3
Description: NF9831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9831_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 9 - 361
Target Start/End: Original strand, 35407199 - 35407555
Alignment:
| Q |
9 |
agcagagatgcacctgatgtattctctggcaatggtcatgaggtatgtat----gtggttccctacaatgatcttactattattacatggctatatactt |
104 |
Q |
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| T |
35407199 |
agcagtgatgcacctgatgtattctctggcaatggtcatgaggtatgtatatatgtggttacctacaatgatcttactattattacatggctatatactt |
35407298 |
T |
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| Q |
105 |
tgatcatttcaatctagatacgttgtttggataatgacttcaatagaatgaaaataatgatatgtggattgaatagtgacttctataggttgatgtataa |
204 |
Q |
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| T |
35407299 |
tgatgatttcaatctagatacgtggtttggataatgacttcaatagaatgaaaataatgatatgtggattgaatagtgacttctataggttgatgtataa |
35407398 |
T |
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| Q |
205 |
ttaggaatccaactatatagtcttggaaatataaccattagtgtgatattaggtgtttctaaattagtcctaaactttatttagaaatgaagagaagaaa |
304 |
Q |
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| T |
35407399 |
ttaggaatccaactatatagtcttggaaatataaccattagtgtgatattaggtgtttctaaattagtcctaaactttatttagaaatgaagagaagaaa |
35407498 |
T |
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| Q |
305 |
tgtggtttggaagggaaaacctatgaaagttggtcggttagtttataaggaatactc |
361 |
Q |
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| T |
35407499 |
tgtggtttggaagggaaaacctatgaaagttggtcggttagtttataaggaatactc |
35407555 |
T |
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