View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9831_high_6 (Length: 307)
Name: NF9831_high_6
Description: NF9831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9831_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 10795780 - 10796070
Alignment:
| Q |
1 |
aaatatactatatacttttattaagaatatagtatctttggcattaaacaatga-tgatggcggcgcccagcacacaagtttagtgcagtggcgaaattt |
99 |
Q |
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| T |
10795780 |
aaatatactatatacttttattaagaatatagtatcttaggcattaaacaatgaatgatggcggcgcccagcacacaagtttagtgcagtggcgaaattt |
10795879 |
T |
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| Q |
100 |
tccttatattgatagcttgataaatttctnnnnnnnntcatatactttttcttcttcaatcactagttaaaaccaataattgtggttttgtaagaataat |
199 |
Q |
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| T |
10795880 |
tccttatattgatagctttataaatttctaaaaaaaatcatatactttttcttattcaatcactggttaaaaccaataattgtggttttgtaagaataat |
10795979 |
T |
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| Q |
200 |
gaaatatataaatgctatgtatatatggattgattttgatgaaatgaatctatactcctgggttttcttgtggttcaaaaacgcggttctt |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10795980 |
gaaatatataaatgctatgtatatatggattgattttgatgaaatgaatctatactcctgggttttcctgtggttcaaaaacgcggttctt |
10796070 |
T |
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