View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9831_low_1 (Length: 708)
Name: NF9831_low_1
Description: NF9831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9831_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 638; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 47 - 692
Target Start/End: Original strand, 44209925 - 44210570
Alignment:
| Q |
47 |
aaagagagtacatcaaatggaggatagtcaaacaatcggaaacagaaaccaaggaaaactattggaaaatcaataagagtgagttaggtgtaaatgatca |
146 |
Q |
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| T |
44209925 |
aaagagagtacatcaaatggaggatagtcaaacaatcggagacagaaaccaaggaaaactattggaaaatcaataagagtgagttaggtgtaaatgatca |
44210024 |
T |
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| Q |
147 |
actttgaaccaaaatacatgtcaagactgtatgacatcaattgacccatgaagccaacccacctagtgggagaaagcgtagttgttattgcattgaatta |
246 |
Q |
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| T |
44210025 |
actttgaaccaaaatacatgtcaagactgtatgacatcaattgacccatgaagccaacccacctagtgggagaaagcgtagttgttattgcattgaatta |
44210124 |
T |
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| Q |
247 |
aatttcaacactttgtgcagcattattcacaatcatcagcacatcaataacatggtgaggcttggatagggcagattcatctctaggaccatcaattatc |
346 |
Q |
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| T |
44210125 |
aatttcaacactttgtgcagcattattcacaatcatcagcacatcaataacatggtgaggcttggatagggcagattcatctctaggaccatcaattatc |
44210224 |
T |
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| Q |
347 |
acatgtcaattcatctacaaaatccaaaattaacatttgtgtatcacaaactacaggaccaagatctgcatggttgactctcactgcttgctaatttcct |
446 |
Q |
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| T |
44210225 |
acatgtcaattcatctacaaaatccaaaattaacatttgtgtatcacaaactacaggaccaagatctgcatggttgactctcactgcttgctaatttcct |
44210324 |
T |
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| Q |
447 |
aatgtccaaaatttacaattcttatttctctaggctgtctattctgctgtggcattttaaaattccagaaatcttactattttgttggttcattccagga |
546 |
Q |
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| T |
44210325 |
aatgtccaaaatttacaattcttatttctctaggctgtctattctgctgtggcattttaaaattccagaaatcttaccattttgttggttcattccagga |
44210424 |
T |
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| Q |
547 |
tattggggattcctggagcgtcgagtctgtgaaggacagtcattagaagaatgccctgtttcttgacagtgcgaacaaactgcttgccttgggttggtat |
646 |
Q |
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| T |
44210425 |
tattggggattcctggagcgtcgagtctgtgaaggacagtcattagaagaatgccctgtttcttgacagtgcgaacaaactgcttgccttgggttggtat |
44210524 |
T |
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| Q |
647 |
gatgggcgttgctggttgatgcagtagaccttgggttggtatgatg |
692 |
Q |
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| T |
44210525 |
gatgggcgttgctggttgatgcagtagaccttgggttggtatgatg |
44210570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 673
Target Start/End: Original strand, 44210553 - 44210593
Alignment:
| Q |
633 |
ccttgggttggtatgatgggcgttgctggttgatgcagtag |
673 |
Q |
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| T |
44210553 |
ccttgggttggtatgatggacgttgctggttgatgcagtag |
44210593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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