View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9831_low_12 (Length: 230)
Name: NF9831_low_12
Description: NF9831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9831_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 84 - 214
Target Start/End: Complemental strand, 36012663 - 36012534
Alignment:
| Q |
84 |
gatgataaaatttcataaaaaagaaaagcttatatcgagttgttttaatatattctcataaaaatcatttttaaagatatatttatgnnnnnnnntcgat |
183 |
Q |
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| T |
36012663 |
gatgataaaatttcataaaaaa-aaaagcttatattgagttgttttaatatattctcataaaaatcatttttaaagatatatttatgaaaaaaaatcgat |
36012565 |
T |
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| Q |
184 |
ttttataatgctaaatctctgaacaataaat |
214 |
Q |
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| T |
36012564 |
ttttataatgctaaatctcttaacaataaat |
36012534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 36012752 - 36012686
Alignment:
| Q |
18 |
atgaaagtagaaaatgatcattttgatccttaaacaagttttcccgcacaagtttaactaattttag |
84 |
Q |
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|||||||||||||||| ||| |||| || ||||||||||||||| |||||||||||||||||||||| |
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| T |
36012752 |
atgaaagtagaaaatggtcactttggtctttaaacaagttttccagcacaagtttaactaattttag |
36012686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 19271726 - 19271693
Alignment:
| Q |
19 |
tgaaagtagaaaatgatcattttgatccttaaac |
52 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
19271726 |
tgaaagtagaaaatgatcattttgatccctaaac |
19271693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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