View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9831_low_3 (Length: 426)
Name: NF9831_low_3
Description: NF9831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9831_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 3166107 - 3166506
Alignment:
| Q |
18 |
actcacgtgctcccagaataccgttgttgcaagtcttcaaacttggctttacagacctacaaaagtaatatctctactttaattaacagacaccaactaa |
117 |
Q |
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| T |
3166107 |
actcacgtgctcccagaataccgttgttgcaagtcttcaaacttggctttacagacctacaaaagtaatatctctactttaattaacggacaccaactaa |
3166206 |
T |
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| Q |
118 |
ctttccttcagttatttttgtagaaaagtgagattataatcatacacatcatatttgagtatataagtcatatcttaccccaaaacttggaaacaaaata |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3166207 |
ctttccttcaattatttttgtagaaaagtgagattataatcatacacatcatatttgagtatataagtcatatcttaccccaaaacttggaaacaaaata |
3166306 |
T |
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| Q |
218 |
aaattcatcagtactttagcatatgcatcatcaacaaaacatgctcaatttcaacnnnnnnnncttaagctgtcgtttggatttgnnnnnnnnnnnnnnn |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3166307 |
aaattcatcagtactttagcatatgcatcatcaacaaaacatgctcaatttcaacaaaaaaaacttaagctgtcgtttggatttgttttttctatttttc |
3166406 |
T |
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| Q |
318 |
nnnnnnagttgatatgtttttgggaatgacaacaaaacacaaggtctaaccattgaaataaatttacctattaaataaaacatgttttttaatcctatgc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3166407 |
ttttttagttgatatgtttttgggaatgacaacaaaacacaaggtttaaccattgaaataaatttacctattaaataaaacatg-tttttaatcctatgc |
3166505 |
T |
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