View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9831_low_4 (Length: 423)
Name: NF9831_low_4
Description: NF9831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9831_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 11 - 408
Target Start/End: Original strand, 19568000 - 19568397
Alignment:
| Q |
11 |
cagagaacaattgtggataagctgttgatgaggtgagaaggtgggtctttgtgaattgtgaattagaaattagggttttccatgatttgcaaacgagctt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19568000 |
cagagaacaattgtggataagctgttgatgaggtgagaaggtgggtctttgtgaattgtgaattagaaattagggttttccatgatttgcaaacgagctt |
19568099 |
T |
|
| Q |
111 |
taattggagaagggatctcaccggaagcctcagaaggatgttgaagaggacttcttccggaaaaacaggtgcttcgtcgccggtcggaggaagaggctgt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
19568100 |
taattggagaagggatctcaccggaagcctcagaaggatgtcgaagaggacttcttccggcaaaataggtgcttcgtcgccggtcggaggaagaggctgt |
19568199 |
T |
|
| Q |
211 |
tcgttcttgacggtggtttcggacagtggttgagaaaaaacggtgtggttttgagaatggtggagacgaatacacgaaagatcggtgattttgcattccc |
310 |
Q |
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| T |
19568200 |
tcgttcttgacggtggtttcggacagtggttgagaaaaaacggtgtggttttgagaatggtggagacgaatacacgaaagatcggtgattttgcattccc |
19568299 |
T |
|
| Q |
311 |
cagtcttcatctcatcgtcatcgtcatcggccattcgaacgcctgttgcactgcaatcttcttgaaattgatgcagatgagttctcgtgggagaaaga |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19568300 |
cagtcttcatctcatcgtcatcgtcatcggccattcgaacgcctgttgtactgcaatcttcttgaaattgatgcagatgagttctcgtgggagaaaga |
19568397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 39 - 269
Target Start/End: Complemental strand, 23681732 - 23681499
Alignment:
| Q |
39 |
tgaggtgagaaggtgggtctttgtgaattgtgaattagaaattagggttttccatgatttgcaaacgagctttaattggagaagggatctcaccggaagc |
138 |
Q |
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|||| ||||||| ||| |||||| |||||| | ||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| |
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| T |
23681732 |
tgagctgagaagatggctctttgcgaattgaggattggaaattagggttttccatgatttggaaacgcactttaattggagaagggatctcacaggaagc |
23681633 |
T |
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| Q |
139 |
ctcagaaggatgttgaagaggacttcttccggaaaaacaggtgcttcgtcgc---cggtcggaggaagaggctgttcgttcttgacggtggtttcggaca |
235 |
Q |
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| T |
23681632 |
ctcagaaggatatcgaagttgacttcttccggcaaaacaggtgcttcgtcgccggcggtcggaggaagaggctgttcgttcttgacggtggtttcggaca |
23681533 |
T |
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| Q |
236 |
gtggttgagaaaaaacggtgtggttttgagaatg |
269 |
Q |
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| T |
23681532 |
gtggttcagtacaaacgacgtcgttttgagaatg |
23681499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 44005453 - 44005556
Alignment:
| Q |
46 |
agaaggtgggtctttgtgaattgtgaattagaaattagggttttccatgatttgcaaacgagctttaattggagaagggatctcaccggaagcctcagaa |
145 |
Q |
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|||| |||||| ||||||||||| | |||||| |||||||||||||| |||||||||||| ||| |||| || |||||||||||||||||| ||| || |
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| T |
44005453 |
agaaagtgggtttttgtgaattggggattagagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagcttcaaaa |
44005552 |
T |
|
| Q |
146 |
ggat |
149 |
Q |
| |
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|||| |
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| T |
44005553 |
ggat |
44005556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 58 - 176
Target Start/End: Complemental strand, 43907742 - 43907624
Alignment:
| Q |
58 |
tttgtgaattgtgaattagaaattagggttttccatgatttgcaaacgagctttaattggagaagggatctcaccggaagcctcagaaggatgttgaaga |
157 |
Q |
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|||| |||||| |||| ||| |||||||||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||| |||||| | || || |
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| T |
43907742 |
tttgcgaattgggaatcagagattagggttttccatgatttgcaaacacacttgtattggacaagggatttcaccggaagcctcaaaaggatctcgacga |
43907643 |
T |
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| Q |
158 |
ggacttcttccggaaaaac |
176 |
Q |
| |
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|| ||||||||| ||||| |
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| T |
43907642 |
tgagttcttccggcaaaac |
43907624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 43986846 - 43986982
Alignment:
| Q |
10 |
gcagagaacaattgtggataagctgttgatgaggtgagaaggtgggtctttgtgaattgtgaattagaaattagggttttccatgatttgcaaacgagct |
109 |
Q |
| |
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||||| |||| |||||||||||| ||||| ||| |||| |||| | |||| |||||||| | || ||||||||||||||||||||||||| | | |
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| T |
43986846 |
gcagataacagttgtggataagcggttga---ggtcagaaagtggttgtttgcgaattgtgggtctgagattagggttttccatgatttgcaaatgcatt |
43986942 |
T |
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| Q |
110 |
ttaattggagaagggatctcaccggaagcctcagaaggat |
149 |
Q |
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| T |
43986943 |
tgaattgaagcagggatttcaccggaagtctcaaaaggat |
43986982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 43901944 - 43901887
Alignment:
| Q |
82 |
agggttttccatgatttgcaaacgagctttaattggagaagggatctcaccggaagcc |
139 |
Q |
| |
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|||||||||||||||||||||||| | || |||| |||| |||||||||||||||| |
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| T |
43901944 |
agggttttccatgatttgcaaacgcgtttatattgcagaatcgatctcaccggaagcc |
43901887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 104
Target Start/End: Original strand, 19888560 - 19888589
Alignment:
| Q |
75 |
agaaattagggttttccatgatttgcaaac |
104 |
Q |
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| T |
19888560 |
agaaattagggttttccatgatttgcaaac |
19888589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 19879695 - 19879727
Alignment:
| Q |
72 |
attagaaattagggttttccatgatttgcaaac |
104 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
19879695 |
attagaaattagggttttccaagatttgcaaac |
19879727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 104
Target Start/End: Complemental strand, 14748618 - 14748589
Alignment:
| Q |
75 |
agaaattagggttttccatgatttgcaaac |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
14748618 |
agaaattagggttttccatgatttgcaaac |
14748589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 104
Target Start/End: Original strand, 32579711 - 32579740
Alignment:
| Q |
75 |
agaaattagggttttccatgatttgcaaac |
104 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
32579711 |
agaaattagggttttccatgatttgcaaac |
32579740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 20578968 - 20579029
Alignment:
| Q |
79 |
attagggttttccatgatttgcaaacgagctttaattggagaagggatctcaccggaagcct |
140 |
Q |
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|||||||||||||||||||||||||| | || |||| || ||||||||||| |||||||| |
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| T |
20578968 |
attagggttttccatgatttgcaaacacgtttcaatttcagtagggatctcactggaagcct |
20579029 |
T |
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