View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9832_high_1 (Length: 491)
Name: NF9832_high_1
Description: NF9832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9832_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 423
Target Start/End: Complemental strand, 41400338 - 41399924
Alignment:
| Q |
16 |
actgttctatctaatacttttttcttatgcatgttccgtctgatacttattattttgctaatcaaaggcatcctaacaattttatttagaatttaaactc |
115 |
Q |
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| T |
41400338 |
actgttctacctaatacttttttcttaagcatgttccgtctgatacttattattttgctaataaaaggcatcctaacaattttatttagaatttaaactc |
41400239 |
T |
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| Q |
116 |
tttgtctcaactctttttctatactagcaatctaaaaata------taaaatagtcaagtatatccaaagaaacatttagtgaataaatgaaatcatttc |
209 |
Q |
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| T |
41400238 |
tttgtctcaactctttttcgatactagcaatctaaaaataaaaatataaaatagtcaagtatatccaaagaaacatttagtgaataaatgaaatcatttc |
41400139 |
T |
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| Q |
210 |
atgaatt-gtacaaattcacatctctaatttatcaggatgcaaggaaccttaaaatagaaatttcacacaacaactaaaggtgacaaacaaaaggaaggc |
308 |
Q |
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| T |
41400138 |
atgaatttgtacaaattcacatctctaatttatcaggatgcaaggaaccttagaatagaaatttcacacaacaactaaaggtgacaaacaaaaggaaggt |
41400039 |
T |
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| Q |
309 |
aacggcgacagcggtggaacgctaaccaaacccttgacgtcaccgtcccataaaccagtccaaaaagacggcgttaacggcatctctttaaaacagttca |
408 |
Q |
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| T |
41400038 |
aacggcgacagcggtggaacgctgaccaaacccttgacatcaccgtcccataaaccagtccaaaaagacggcgttaacggcatctctttaaaacagttca |
41399939 |
T |
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| Q |
409 |
tatcatattccgtta |
423 |
Q |
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| T |
41399938 |
tatcatattccgtta |
41399924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 259 - 423
Target Start/End: Complemental strand, 41407198 - 41407034
Alignment:
| Q |
259 |
taaaatagaaatttcacacaacaactaaaggtgacaaacaaaaggaaggcaacggcgacagcggtggaacgctaaccaaacccttgacgtcaccgtccca |
358 |
Q |
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| T |
41407198 |
taaaatagaaatttcacacaacaactaaaggtgacaaacagaaggaagataacggagacaacggtgaaacgctggacatccccttgacatctccgtccca |
41407099 |
T |
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| Q |
359 |
taaaccagtccaaaaagacggcgttaacggcatctctttaaaacagttcatatcatattccgtta |
423 |
Q |
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| T |
41407098 |
caaaccagtccaaaaagacggcgttaaaggcatctctttgaaacaactcatatcatattccgtta |
41407034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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