View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9832_high_2 (Length: 312)
Name: NF9832_high_2
Description: NF9832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9832_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 34 - 303
Target Start/End: Original strand, 2904312 - 2904587
Alignment:
| Q |
34 |
ttagaagaagcctttcgcccatggttcagatttattcagactggtttcaatggtttag--ttgtgcagtatctgtgtagagattcatttattttggttaa |
131 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
2904312 |
ttagaagaagcctttcacccatggttcagatttattcagactggtttcaatggtttagaattgtgcagtatctgtgtagagattcctttattttggttaa |
2904411 |
T |
|
| Q |
132 |
caaatctggatataggttgtcgattgtgttacttacactcctcacttggatagtaggtat----gtatgtatctattttttgtatacatttggattcttg |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2904412 |
caaatctggatataggttgtcgattgtgttacttacactcctcacttggatagtaggtatgtatgtatgtatctattttttgtatacatttggattcttg |
2904511 |
T |
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| Q |
228 |
ttgcgcataaaataacattttcaatttctaatattttagcatggttgggatgattgttttggagattgattcatct |
303 |
Q |
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| T |
2904512 |
ttgcgcataaaataacattttcaatttctaatattttagcatggttgggatgattgttttggagattgattcatct |
2904587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 34 - 303
Target Start/End: Original strand, 2852280 - 2852555
Alignment:
| Q |
34 |
ttagaagaagcctttcgcccatggttcagatttattcagactggtttcaatggtttag--ttgtgcagtatctgtgtagagattcatttattttggttaa |
131 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
2852280 |
ttagaagaagcctttcacccatggttcagatttattcagactggtttcaatggtttagaattgtgcagtatctgtgtagagattcctttattttggttaa |
2852379 |
T |
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| Q |
132 |
caaatctggatataggttgtcgattgtgttacttacactcctcacttggatagtaggtat----gtatgtatctattttttgtatacatttggattcttg |
227 |
Q |
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| T |
2852380 |
caaatctggatataggttgtctattgtgttacttacactcctcacttggatagtaggtatgtatgtatgtatctattttttgtatacatttggattcttg |
2852479 |
T |
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| Q |
228 |
ttgcgcataaaataacattttcaatttctaatattttagcatggttgggatgattgttttggagattgattcatct |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2852480 |
ttgcgcataaaataacattttcaatttctaatattttagcatggttgggatgattgttttggagattgattcatct |
2852555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 34 - 288
Target Start/End: Original strand, 42950672 - 42950939
Alignment:
| Q |
34 |
ttagaagaagcctttcgcccatggttcagatttattcagactggt-----------ttcaatggtttag--ttgtgcagtatctgtgtagagattcattt |
120 |
Q |
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| T |
42950672 |
ttagaagaagcctttcgccaatggttcagatttattcagactggtgtcaatgatttttcaatggtttagaattgtgcagtatctgtgtagagattctttt |
42950771 |
T |
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| Q |
121 |
attttggttaacaaatctggatataggttgtcgattgtgttacttacactcctcacttggatagtaggtatgtatgtatctattttttgtatacatttgg |
220 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42950772 |
attttggttaacaaatctggatataggctgtcgtttgtgttacttacacccctcacttggatagtaggtatgtatgtatctattttttgtatacatttgg |
42950871 |
T |
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| Q |
221 |
attcttgttgcgcataaaataacattttcaatttctaatattttagcatggttgggatgattgttttg |
288 |
Q |
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||| ||||||||||||||||||| ||||| |||||||||||||||| |||| | |||| ||||||||| |
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| T |
42950872 |
atttttgttgcgcataaaataactttttccatttctaatattttagtatggctaggataattgttttg |
42950939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 270
Target Start/End: Original strand, 1179521 - 1179555
Alignment:
| Q |
236 |
aaaataacattttcaatttctaatattttagcatg |
270 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
1179521 |
aaaataacattttccatttctaatattttagcatg |
1179555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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