View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9832_high_3 (Length: 240)
Name: NF9832_high_3
Description: NF9832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9832_high_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 40944776 - 40944556
Alignment:
| Q |
18 |
gacttggtagagaatctaatcacttcaaccaaaggaccaagccattgtggtgaagttctaagcgcatatctatcttgttttggtttctgcaatggatcca |
117 |
Q |
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| T |
40944776 |
gacttggtagagaatctaatcacttcaaccaaaggaccaagccattgtggtgaagttctaagcgcatatctatcttgttttggtttctgcaatggatcca |
40944677 |
T |
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| Q |
118 |
tctcatgcaactttttatctgctttgacataagcacttccatccaaaatgtgttccataatagcagcagcctcaatttgaccagggtggtgtttcaactt |
217 |
Q |
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| T |
40944676 |
tctcatgcaactttttatctgctttgacataagcacttccatccaaaatgtgttccataatagcagcagcctcaatttgaccagggtggtgtttcaactt |
40944577 |
T |
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| Q |
218 |
gtgtgtcaaatgatcggtaaa |
238 |
Q |
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| T |
40944576 |
gtgtgtcaaatgatcggtaaa |
40944556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 40958741 - 40958521
Alignment:
| Q |
18 |
gacttggtagagaatctaatcacttcaaccaaaggaccaagccattgtggtgaagttctaagcgcatatctatcttgttttggtttctgcaatggatcca |
117 |
Q |
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| T |
40958741 |
gacttggtagagaatctaatcacttcaaccaaaggaccaagccattgtggtgaagttctaagcgcatatctatcttgttttggtttctgcaatggatcca |
40958642 |
T |
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| Q |
118 |
tctcatgcaactttttatctgctttgacataagcacttccatccaaaatgtgttccataatagcagcagcctcaatttgaccagggtggtgtttcaactt |
217 |
Q |
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| T |
40958641 |
tctcatgcaactttttatctgctttgacataagcacttccatccaaaatgtgttccataatagcagcagcctcaatttgaccagggtggtgtttcaactt |
40958542 |
T |
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| Q |
218 |
gtgtgtcaaatgatcggtaaa |
238 |
Q |
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| T |
40958541 |
gtgtgtcaaatgatcggtaaa |
40958521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 28184642 - 28184865
Alignment:
| Q |
17 |
agacttggtagagaatctaatcacttcaaccaaaggaccaagccattgtggtgaagttctaagcgcatatctatcttgttttggtttctgcaatggatcc |
116 |
Q |
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| T |
28184642 |
agacttggtcgaaaatcttatcacttcaatcaaaggaccaagccattgaggtgaagttctaagtgcataacgatcttgtttaggcttttgcaaaggatca |
28184741 |
T |
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| Q |
117 |
atctcatgcaactttttatctgctttgacataagcacttccatccaaaatgtgttccataatagcagcagcctcaatttgaccagggtggtgtttcaact |
216 |
Q |
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| T |
28184742 |
gtctcgtgtaacttcttagcggctttaacataagcgcttccatccaaaatatgctccataatagcagcagcttcaatttgaccagggtgatgcttcaact |
28184841 |
T |
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| Q |
217 |
tgtgtgtcaaatgatcggtaaatt |
240 |
Q |
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| T |
28184842 |
tatgagtcaaatgatcagtaaatt |
28184865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 202
Target Start/End: Original strand, 42610065 - 42610213
Alignment:
| Q |
54 |
ccaagccattgtggtgaagttctaagcgcatatctatcttgttttggtttctgcaatggatccatctcatgcaactttttat-ctgctttgacataagca |
152 |
Q |
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| T |
42610065 |
ccaagccactgcggtgatgttcgaatcgcgtatctatcttgtttgggcttctgaagtggattaatctcatgta-ctttttgtgcagccttaccataataa |
42610163 |
T |
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| Q |
153 |
cttccatccaaaatgtgttccataatagcagcagcctcaatttgaccagg |
202 |
Q |
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| T |
42610164 |
cttccatctaaaatatgttccataatagcagcagcctcaatttgaccagg |
42610213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 43216391 - 43216345
Alignment:
| Q |
153 |
cttccatccaaaatgtgttccataatagcagcagcctcaatttgacc |
199 |
Q |
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| T |
43216391 |
cttccatctaaaatgtgttccataatagcagctgcctcgatttgacc |
43216345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 40549350 - 40549273
Alignment:
| Q |
161 |
caaaatgtgttccataatagcagcagcctcaatttgaccagggtggtgtttcaacttgtgtgtcaaatgatcggtaaa |
238 |
Q |
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| T |
40549350 |
caaaatatgttccatcaaggctgcagcttcaatttgaccaggatgatgtttcaatttatgtgttaaatgatctgtaaa |
40549273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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