View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9832_low_1 (Length: 635)

Name: NF9832_low_1
Description: NF9832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9832_low_1
NF9832_low_1
[»] chr5 (5 HSPs)
chr5 (27-603)||(33811292-33811867)
chr5 (27-603)||(33816210-33816785)
chr5 (27-603)||(33807638-33808213)
chr5 (553-603)||(16698620-16698670)
chr5 (426-520)||(16698504-16698601)
[»] chr3 (11 HSPs)
chr3 (210-603)||(50603003-50603403)
chr3 (407-606)||(44782521-44782733)
chr3 (354-604)||(54967209-54967477)
chr3 (348-452)||(31725346-31725448)
chr3 (354-520)||(39298736-39298908)
chr3 (407-591)||(54979854-54980051)
chr3 (407-522)||(18556392-18556511)
chr3 (556-603)||(17645933-17645981)
chr3 (539-603)||(31725198-31725262)
chr3 (496-524)||(17645869-17645897)
chr3 (555-603)||(18556305-18556353)
[»] chr6 (4 HSPs)
chr6 (232-603)||(31151926-31152298)
chr6 (407-603)||(22981504-22981710)
chr6 (407-603)||(23806698-23806904)
chr6 (345-527)||(1111378-1111564)
[»] chr1 (2 HSPs)
chr1 (389-603)||(29706854-29707069)
chr1 (429-520)||(27642132-27642225)
[»] scaffold0045 (1 HSPs)
scaffold0045 (354-587)||(26514-26752)
[»] chr8 (4 HSPs)
chr8 (354-603)||(41481548-41481815)
chr8 (354-605)||(36167547-36167815)
chr8 (410-598)||(18951129-18951326)
chr8 (557-602)||(18116885-18116930)
[»] chr7 (10 HSPs)
chr7 (407-603)||(4842648-4842857)
chr7 (354-604)||(25857130-25857395)
chr7 (354-603)||(4835575-4835840)
chr7 (407-522)||(13465046-13465165)
chr7 (553-603)||(24380113-24380163)
chr7 (344-400)||(8252797-8252853)
chr7 (409-529)||(17845847-17845969)
chr7 (407-520)||(24379370-24379487)
chr7 (426-520)||(27341025-27341120)
chr7 (553-603)||(24379279-24379329)
[»] scaffold0479 (1 HSPs)
scaffold0479 (407-604)||(2727-2937)
[»] chr4 (3 HSPs)
chr4 (354-603)||(9757212-9757480)
chr4 (409-520)||(42682924-42683038)
chr4 (426-522)||(37286972-37287069)
[»] scaffold0003 (2 HSPs)
scaffold0003 (553-603)||(342217-342267)
scaffold0003 (426-520)||(342306-342404)
[»] chr2 (2 HSPs)
chr2 (426-518)||(37037942-37038035)
chr2 (553-589)||(37038076-37038112)


Alignment Details
Target: chr5 (Bit Score: 551; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 27 - 603
Target Start/End: Original strand, 33811292 - 33811867
Alignment:
Q  27 tgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811292 tgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa 33811391  T
Q  127 attctaccatgtcagtaacaaattgacaaacttggcaattggtagctattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg 226  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811392 attctaccatgtcagtaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg 33811491  T
Q  227 cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagag 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811492 cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagag 33811591  T
Q  327 ttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatt 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811592 ttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatt 33811691  T
Q  427 tgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcaca-tgagaaggttttccacgctaaaattttgtt 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  33811692 tgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt- 33811790  T
Q  526 gtgtgtcattttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 603  Q
     ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811791 -tgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 33811867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 27 - 603
Target Start/End: Original strand, 33816210 - 33816785
Alignment:
Q  27 tgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816210 tgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa 33816309  T
Q  127 attctaccatgtcagtaacaaattgacaaacttggcaattggtagctattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg 226  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816310 attctaccatgtcagtaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg 33816409  T
Q  227 cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagag 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816410 cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagag 33816509  T
Q  327 ttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatt 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816510 ttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatt 33816609  T
Q  427 tgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcaca-tgagaaggttttccacgctaaaattttgtt 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  33816610 tgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt- 33816708  T
Q  526 gtgtgtcattttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 603  Q
     ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816709 -tgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 33816785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 27 - 603
Target Start/End: Original strand, 33807638 - 33808213
Alignment:
Q  27 tgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33807638 tgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa 33807737  T
Q  127 attctaccatgtcagtaacaaattgacaaacttggcaattggtagctattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg 226  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33807738 attctaccatgtcagtaacaaattgacaaacttggcaatgggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg 33807837  T
Q  227 cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagag 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33807838 cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagag 33807937  T
Q  327 ttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatt 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33807938 ttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatt 33808037  T
Q  427 tgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcaca-tgagaaggttttccacgctaaaattttgtt 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  33808038 tgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt- 33808136  T
Q  526 gtgtgtcattttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 603  Q
     ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33808137 -tgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 33808213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 553 - 603
Target Start/End: Original strand, 16698620 - 16698670
Alignment:
Q  553 tgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 603  Q
    |||||||| ||||||||||||||| ||||||||||||   |||||||||||    
T  16698620 tgcctattctgagttcacggaggatggaaattatgcatatatttcccaaca 16698670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 520
Target Start/End: Original strand, 16698504 - 16698601
Alignment:
Q  426 ttgtattcccattattattatagtgg-agatttaagaggcctacgggtcccgtggttttt-ccttactcaca-tgagaaggttttccacgctaaaatt 520  Q
    ||||||||||||||| |||||||||| || ||||||||| | | ||||||| |  ||||| |||| |||||| |||||||| ||||||| ||||||||    
T  16698504 ttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccataatttttccctttctcacattgagaaggatttccacactaaaatt 16698601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 210 - 603
Target Start/End: Original strand, 50603003 - 50603403
Alignment:
Q  210 gaaccaagcatttaatgcacacggttcaaaaccctctataaatagagaagagtttcagcaatg-aaacacaccacaaca-----caatcctcactcacat 303  Q
    ||||||||||||||||||  ||||||||   | ||||||||||||||||||| |||||||| | |||||||||||||||     |||||||||||||||     
T  50603003 gaaccaagcatttaatgcttacggttcatttctctctataaatagagaagagcttcagcaaagcaaacacaccacaacatagcacaatcctcactcacac 50603102  T
Q  304 agagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgt--gagagttgtatctacaaattgagatacatag 401  Q
    |||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||    
T  50603103 agagttgagagaaaaatagaaagttcctcataagagtg--agagaaaaatatagtgagccaatttgtatgagagttgtatctacaaattgagatatatag 50603200  T
Q  402 ttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcaca-tgaga 500  Q
    ||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  50603201 ttaggtccatctaaaggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggttccgtggttttttcttactcacattgaga 50603300  T
Q  501 aggttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttccca 600  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||| || |||||||||||||||||||||| |||||| | | |||||||||||    
T  50603301 aggttttccacgctaaaattttattgtgtgtcattttacgttttcgctaaagtgtctattttgagttcacggaggagagaaattgtactggcatttccca 50603400  T
Q  601 aca 603  Q
    |||    
T  50603401 aca 50603403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 407 - 606
Target Start/End: Complemental strand, 44782733 - 44782521
Alignment:
Q  407 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacat-gagaa 501  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||| | | ||||||||||||||||  |||| |||| || |||||    
T  44782733 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtggttttttccctttctcatattgagaa 44782634  T
Q  502 ggttttccacgctaaaattttgttgtgtgtcatt-----------ttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcag 590  Q
    ||||||||||||||||||| | || |||||||||           | ||||||||||||   || |||||||||||||||||||||||||||||||||||    
T  44782633 ggttttccacgctaaaattctctt-tgtgtcattacgtttatatttcacgtttccgctag--tgtctattttgagttcacggaggagggaaattatgcag 44782537  T
Q  591 gcatttcccaacataa 606  Q
    ||||||||||||||||    
T  44782536 gcatttcccaacataa 44782521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 354 - 604
Target Start/End: Complemental strand, 54967477 - 54967209
Alignment:
Q  354 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 447  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  54967477 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata 54967378  T
Q  448 gtggagattt--aagaggcctacgggtcccgtggtttttcc-ttactcacat-gagaaggttttccacgctaaaattttgttgtgtgtcatt-------- 535  Q
    |||||  |||  |||||||| | |||||||||||||||||| || |||| || |||||||||||||||||||||||| | || |||||||||            
T  54967377 gtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgctttt 54967279  T
Q  536 ---ttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaacat 604  Q
       | ||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  54967278 atttcacgtttccgctag--tgcctattttgagttgacggaggagggaaattatgcaggcatttcccaacat 54967209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 348 - 452
Target Start/End: Complemental strand, 31725448 - 31725346
Alignment:
Q  348 aaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattata 447  Q
    ||||||||||| |  |||||||||||| ||||  |||||||||||||||||| || |||||||||| || |||||||||||||||| ||||||| |||||    
T  31725448 aaaaatatagttaatcaatttgtgagaattgt--ctacaaattgagatacatcgtaaggtccacctaagtgtgaagatttgtattctcattattgttata 31725351  T
Q  448 gtgga 452  Q
     ||||    
T  31725350 ttgga 31725346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 354 - 520
Target Start/End: Original strand, 39298736 - 39298908
Alignment:
Q  354 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 447  Q
    ||||||||||||||||||||||| ||   |||||||||||| | |||     ||||| ||||||| ||||||||| | |||||||||| |||| ||||||    
T  39298736 atagtgagccaatttgtgagagt-gtccttacaaattgagagatatattgtagttagatccacctaagggtgaagttgttgtattccctttatcattata 39298834  T
Q  448 gtggagatttaagaggcctacgggtcccgtggtttttccttactcaca-tgagaaggttttccacgctaaaatt 520  Q
    |||||  ||||||||||  | |||||||||| |||||||||  ||||| |||||||||||| ||| ||||||||    
T  39298835 gtggaagtttaagaggcacaagggtcccgtgatttttccttcatcacattgagaaggtttttcacactaaaatt 39298908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 407 - 591
Target Start/End: Complemental strand, 54980051 - 54979854
Alignment:
Q  407 tccacctgagggtgaagat-ttgtattcccattattattatagtggagattt--aagaggcctacgggtcccgtggttttt-ccttactcaca-tgagaa 501  Q
    ||||||| ||||||||| | ||||||||||||||| |||||||||||  |||  |||||||| | |||||||||||||||| |||| |||| | ||||||    
T  54980051 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaa 54979952  T
Q  502 ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcag 590  Q
    ||||||||| ||||||||| | || ||||||           |||| |||||||||||  | ||| ||||||||||| ||||||||||||||||||||||    
T  54979951 ggttttccatgctaaaattctctt-tgtgtcattacacttttatttcacgtttccgct--agtgcttattttgagttgacggaggagggaaattatgcag 54979855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 407 - 522
Target Start/End: Complemental strand, 18556511 - 18556392
Alignment:
Q  407 tccacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggttttt--ccttactcacat-gagaag 502  Q
    ||||||| ||||||||| | |||||||| |||| | |||||||||||  ||||||||||    ||||||||||||||||  |||| |||| || ||||||    
T  18556511 tccacctaagggtgaagttgttgtattctcattgtcattatagtggaagtttaagaggctcgagggtcccgtggttttttgcctttctcagattgagaag 18556412  T
Q  503 gttttccacgctaaaatttt 522  Q
    ||||||||||||||||||||    
T  18556411 gttttccacgctaaaatttt 18556392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 556 - 603
Target Start/End: Original strand, 17645933 - 17645981
Alignment:
Q  556 ctattttgagttcacggaggagggaaattatgcagg-catttcccaaca 603  Q
    |||||||||||||||||| ||||||||||||| ||| ||||||||||||    
T  17645933 ctattttgagttcacggatgagggaaattatggaggtcatttcccaaca 17645981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 603
Target Start/End: Complemental strand, 31725262 - 31725198
Alignment:
Q  539 cgtttccgctaaattgcctatttt-gagttcacggaggagggaaattatgcaggcatttcccaaca 603  Q
    |||||||||||||| ||||||||| || ||||||||| |||  |||||||||| ||||||||||||    
T  31725262 cgtttccgctaaat-gcctatttttgaattcacggagaaggtgaattatgcagacatttcccaaca 31725198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 524
Target Start/End: Original strand, 17645869 - 17645897
Alignment:
Q  496 tgagaaggttttccacgctaaaattttgt 524  Q
    |||||||||||||||||||||||||||||    
T  17645869 tgagaaggttttccacgctaaaattttgt 17645897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 603
Target Start/End: Complemental strand, 18556353 - 18556305
Alignment:
Q  555 cctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 603  Q
    ||||||||||||||| |||||||| |||||||| |||  ||||||||||    
T  18556353 cctattttgagttcatggaggaggcaaattatgtaggtgtttcccaaca 18556305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 232 - 603
Target Start/End: Complemental strand, 31152298 - 31151926
Alignment:
Q  232 ggttcaaaaccctctataaatagagaagagtttcagcaatgaaa-cacaccacaacacaatcctcactcacatagagttgagagaaaaatagagagttcc 330  Q
    |||||||| | ||||||||||||||||||| |||||||| | || |||||||||||||||  | || ||     ||||||||||||||||||||||||||    
T  31152298 ggttcaaatctctctataaatagagaagagcttcagcaaagcaatcacaccacaacacaa--cacaatcctcgggagttgagagaaaaatagagagttcc 31152201  T
Q  331 tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 430  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||||    
T  31152200 tcgtaagagtgtgagagaaaaatatagtaagccaatttgtgagagttgtatctataaatttagatacgtagttaggtccatctgagggtgaagatttgta 31152101  T
Q  431 ttcccattattattatagtggagatttaagaggcctacgggtcccgtggt-ttttccttactcaca-tgagaaggttttccacgctaaaattttgttgtg 528  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||| ||||||||||||||||  |||||||||||||||    
T  31152100 ttcccattattattatagtggagatttaagaggcctacggatcccgtggtttttttcttactcacattgagaaggttttccacattaaaattttgttgtg 31152001  T
Q  529 tgtcattttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 603  Q
    |||||||||| |||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  31152000 tgtcattttatgtttccgctaaagtgcctattttgagttcagagaggagggaaattatgcaggcatttcccaaca 31151926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 407 - 603
Target Start/End: Original strand, 22981504 - 22981710
Alignment:
Q  407 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggtttttcc-ttactcacat-gagaag 502  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||| | |||||||||||||||||| || ||||||| ||||||    
T  22981504 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag 22981603  T
Q  503 gttttccacgctaaaattttgttgtgt-------gtcatttt--acgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggca 593  Q
    |||||||||||||||||| |  |||||        | |||||  |||||||||||  | ||||| ||||||||||||||||| |||||||||||||| ||    
T  22981604 gttttccacgctaaaattct-ctgtgtcattacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtca 22981700  T
Q  594 tttcccaaca 603  Q
    ||||||||||    
T  22981701 tttcccaaca 22981710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 407 - 603
Target Start/End: Complemental strand, 23806904 - 23806698
Alignment:
Q  407 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggtttttcc-ttactcacat-gagaag 502  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||| | |||||||||||||||||| || ||||||| ||||||    
T  23806904 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag 23806805  T
Q  503 gttttccacgctaaaattttgttgtgt-------gtcatttt--acgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggca 593  Q
    |||||||||||||||||| |  |||||        | |||||  |||||||||||  | ||||| ||||||||||||||||| |||||||||||||| ||    
T  23806804 gttttccacgctaaaattct-ctgtgtcattacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtca 23806708  T
Q  594 tttcccaaca 603  Q
    ||||||||||    
T  23806707 tttcccaaca 23806698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 345 - 527
Target Start/End: Complemental strand, 1111564 - 1111378
Alignment:
Q  345 gagaaaaatatagtgagccaatttgtgagagttgtatcta--caaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattatta 442  Q
    ||||||||||||  || |||||||||||||  | ||||||  |||||||||||||||||||||||  || | ||||||||  ||||||||| ||||||||    
T  1111564 gagaaaaatataaggaaccaatttgtgagaaatatatctatacaaattgagatacatagttaggtttacgtaagggtgaaagtttgtattctcattatta 1111465  T
Q  443 tta-tagtggagatttaagaggcctacgggtcccgtggtttttccttactcaca-tgagaaggttttccacgctaaaattttgttgt 527  Q
    ||| ||  | ||||||||||| | || | ||||| || |||||||||| | ||| | ||||||||||| || |||||||||||||||    
T  1111464 ttattatagtagatttaagagacttatgagtcccatgatttttccttatttacattcagaaggttttctacactaaaattttgttgt 1111378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 1e-58; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 389 - 603
Target Start/End: Complemental strand, 29707069 - 29706854
Alignment:
Q  389 ttgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttcctt 488  Q
    |||||||||||||||||||||||| |||||||||||||| |  | |||||||||||||||||||||||||||||| ||| | |||||||| || ||||||    
T  29707069 ttgagatacatagttaggtccacccgagggtgaagattttttattccattattattatagtggagatttaagaggtctatgagtcccgtgattgttcctt 29706970  T
Q  489 actcaca-tgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatg 587  Q
    ||||| | |||||||||||||| | ||||||||||||||||||||||||||| |||  |||||| ||| |||||| |||||||||| ||| |||||||||    
T  29706969 actcatattgagaaggttttcctcactaaaattttgttgtgtgtcattttacatttttgctaaagtgcatattttaagttcacggatgagagaaattatg 29706870  T
Q  588 caggcatttcccaaca 603  Q
     |||||||| ||||||    
T  29706869 gaggcattttccaaca 29706854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 520
Target Start/End: Original strand, 27642132 - 27642225
Alignment:
Q  429 tattcccattattattatagtggagatttaagaggcctacgggtcccgtg-gtttttccttactcaca-tgagaaggttttccacgctaaaatt 520  Q
    ||||||||||||||||||||||||  |||||||| ||   ||  ||||||  ||||||||| |||||| |||||||||||| ||||| ||||||    
T  27642132 tattcccattattattatagtggaagtttaagagacccgaggaccccgtgattttttcctttctcacattgagaaggttttacacgccaaaatt 27642225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 354 - 587
Target Start/End: Complemental strand, 26752 - 26514
Alignment:
Q  354 atagtgagccaatttgtgagagttgtatctacaaattgagataca-----tagttaggtccacctgagggtgaag-atttgtattcccattattattata 447  Q
    |||||||||||||||||||||||  |   |||||||||||| | |     |||| || ||||||| |||||| || | |||||||| | |||| |||| |    
T  26752 atagtgagccaatttgtgagagtgttccttacaaattgagagataaattgtagtgagatccacctaagggtggagtagttgtattctcgttatcattaga 26653  T
Q  448 gtggagatttaagaggcctacgggtcccgtggtttttccttactcacat-gagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccg 546  Q
    |||||  ||||||||||| | ||||||||| |||||||||||||||||| || |||||||||||| |||||||||||||||||   ||||||||||| ||    
T  26652 gtggaagtttaagaggcccaagggtcccgtagtttttccttactcacattgaaaaggttttccaccctaaaattttgttgtgtt--attttacgttttcg 26555  T
Q  547 ctaaattgcctattttgagttcacggaggagggaaattatg 587  Q
    ||||| || |||||||||||||||| |||||||| ||||||    
T  26554 ctaaagtgtctattttgagttcacgaaggagggagattatg 26514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 8e-32; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 354 - 603
Target Start/End: Original strand, 41481548 - 41481815
Alignment:
Q  354 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 447  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  41481548 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata 41481647  T
Q  448 gtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacat-gagaaggttttccacgctaaaattttgttgtgtgtc----------- 532  Q
    ||||| | ||||||||||| | ||||||||||||||||  |||| |||| || |||||||||||||||||||||||| | || ||||||               
T  41481648 gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgtttat 41481746  T
Q  533 attttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 603  Q
    |||| |||||||||||  | || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41481747 atttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 41481815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 354 - 605
Target Start/End: Original strand, 36167547 - 36167815
Alignment:
Q  354 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 447  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  36167547 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata 36167646  T
Q  448 gtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacat-gagaaggttttccacgctaaaattttgttgtgtgtcatt-------- 535  Q
    ||||| | ||||||||||| | |||||| |||||||||  |||| |||| || |||||||||||||||||||||||| | || |||||||||            
T  36167647 gtggaagttttaagaggcccaagggtcc-gtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgtttat 36167744  T
Q  536 ---ttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaacata 605  Q
       | ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36167745 atttcacgtttccgctag--tgcctattttgagttcacggaggagggaaattatgcaggcatttcccaacata 36167815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 410 - 598
Target Start/End: Complemental strand, 18951326 - 18951129
Alignment:
Q  410 acctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacat-gagaaggt 504  Q
    |||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||| ||| |  |||| ||||||||||  |||| ||||||| ||||||||    
T  18951326 acctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaagcccaaaggtctcgtggttttttccctttctcacattgagaaggt 18951227  T
Q  505 tttccacgctaaaattttgttgtgtgtc------attttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcc 598  Q
    |||||| ||||||||| |||    |  |      |||| | ||||||||||   |||||||||||||||||||||||||| |||||||||||||||||||    
T  18951226 tttccatgctaaaattctgtgtcattacgcttatatttcatgtttccgctag--tgcctattttgagttcacggaggaggcaaattatgcaggcatttcc 18951129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 18116930 - 18116885
Alignment:
Q  557 tattttgagttcacggaggagggaaattatgcaggcatttcccaac 602  Q
    |||||| ||||||| || |||| |||||||||||||||||||||||    
T  18116930 tattttaagttcacagacgaggtaaattatgcaggcatttcccaac 18116885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 407 - 603
Target Start/End: Complemental strand, 4842857 - 4842648
Alignment:
Q  407 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacat-gagaa 501  Q
    ||||||| ||||||||| | ||||||||| ||||| ||||||||||| | ||||||||||| | |||||| |||||||||  |||| ||||||| |||||    
T  4842857 tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaagggtcctgtggttttttccctttctcacattgagaa 4842758  T
Q  502 ggttttccacgctaaaattttgttgtgtgtcatt-----------ttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcag 590  Q
    ||||||||||||||||||| | || |||||||||           | ||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  4842757 ggttttccacgctaaaattctctt-tgtgtcattacacttatatttcacgtttccgctag--tgcctattttgagttcacggaggagggaaattatgcag 4842661  T
Q  591 gcatttcccaaca 603  Q
    |||||||||||||    
T  4842660 gcatttcccaaca 4842648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 354 - 604
Target Start/End: Complemental strand, 25857395 - 25857130
Alignment:
Q  354 atagtgagccaatttgtgagagttgtatctacaaatt--gagatacat---agttaggtccacctgagggtgaagat-ttgtattcccattattattata 447  Q
    |||||||||||||||||||||||  |   ||||||||  |||||| ||   ||| || ||||||| | ||||||| | ||||||||||||||| ||||||    
T  25857395 atagtgagccaatttgtgagagtgttccttacaaattaagagatatattgtagtgagatccacctaaaggtgaagttgttgtattcccattatcattata 25857296  T
Q  448 gtgga-gatttaagaggcctacgggtcccgtggtttttcc-ttactcaca-tgagaaggttttccacgctaaaattttgttgtgtgtc-----------a 533  Q
    ||||| | ||||||||||| | |||||||||||||||||| || |||||| |||||||||||||||||||||||||    | ||||||           |    
T  25857295 gtggaagttttaagaggcccaagggtcccgtggtttttccttttctcacattgagaaggttttccacgctaaaatt---ctctgtgtcattacgcttata 25857199  T
Q  534 ttttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaacat 604  Q
    ||| |||||||||||  | |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25857198 tttcacgtttccgct--agtgcctattttaagttcacggaggagggaaattatgcaggcatttcccaacat 25857130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 354 - 603
Target Start/End: Complemental strand, 4835840 - 4835575
Alignment:
Q  354 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 447  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||| ||||||||||| ||||||    
T  4835840 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgcattcccattatcattata 4835741  T
Q  448 gtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacat-gagaaggttttccacgctaaaattttgt-tgt------gtgt-catt 535  Q
    ||||| | ||||||||||| | ||||||||||||||||  |||| ||||||| |||||||||||||||||||||||| | | |||      || |  |||    
T  4835740 gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccacgctaaaattctctgtgtcattacgtttatatt 4835641  T
Q  536 ttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 603  Q
    | |||||||| ||  | ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4835640 tcacgtttccact--agtgcctattttgagttcatggaggagggaaattatgcaggcatttcccaaca 4835575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 407 - 522
Target Start/End: Complemental strand, 13465165 - 13465046
Alignment:
Q  407 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggtttttcc-ttactcacat-gagaag 502  Q
    ||||||||||||||||  | ||||||||||||||| ||||||||||| | ||||||||||| | |||||| ||||||||||| || ||||||| ||||||    
T  13465165 tccacctgagggtgaacttgttgtattcccattatcattatagtggatgttttaagaggcccaagggtcctgtggtttttccctttctcacattgagaag 13465066  T
Q  503 gttttccacgctaaaatttt 522  Q
    ||||||||||||||||||||    
T  13465065 gttttccacgctaaaatttt 13465046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 553 - 603
Target Start/End: Original strand, 24380113 - 24380163
Alignment:
Q  553 tgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 603  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24380113 tgcctattttgagttcacagaggagggaaattatgcaggcatttcccaaca 24380163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 8252853 - 8252797
Alignment:
Q  344 agagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacata 400  Q
    |||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||    
T  8252853 agagaaaaatatagtgagtcaatttatgatagttgtatctacaaattgagatacata 8252797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 409 - 529
Target Start/End: Original strand, 17845847 - 17845969
Alignment:
Q  409 cacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcaca-tgagaaggttt 506  Q
    ||||| ||||||||| | ||||||| ||||||| |||||||||||  ||||||||| | |  ||||| ||||||||||||| |||||| || ||||||||    
T  17845847 cacctaagggtgaagttgttgtatttccattatcattatagtggaagtttaagaggtccaaaggtcctgtggtttttccttcctcacattgggaaggttt 17845946  T
Q  507 tccacgctaaaattttgttgtgt 529  Q
    ||||| |||||||| | ||||||    
T  17845947 tccactctaaaattctcttgtgt 17845969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 407 - 520
Target Start/End: Complemental strand, 24379487 - 24379370
Alignment:
Q  407 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggtttttcc-ttactcacat-gagaag 502  Q
    ||||||| ||||||||| | ||||||||| ||||| ||||||||||| | ||||||||||| |  | ||||||||||||||| || ||||||| ||||||    
T  24379487 tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaaagatcccgtggtttttccctttctcacattgagaag 24379388  T
Q  503 gttttccacgctaaaatt 520  Q
    |||||||||| |||||||    
T  24379387 gttttccacgttaaaatt 24379370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 520
Target Start/End: Complemental strand, 27341120 - 27341025
Alignment:
Q  426 ttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacat-gagaaggttttccacgctaaaatt 520  Q
    ||||||| ||||||| ||| |||| ||  |||||||||   | |||||||||||||||||||| || |||| ||||||||||||||||||||||||    
T  27341120 ttgtatttccattatcattgtagtagaagtttaagaggtacaagggtcccgtggtttttcctttcttacattgagaaggttttccacgctaaaatt 27341025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 553 - 603
Target Start/End: Complemental strand, 24379329 - 24379279
Alignment:
Q  553 tgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 603  Q
    |||||||||| |||||||||||||| ||||||||| || ||||| ||||||    
T  24379329 tgcctattttaagttcacggaggagagaaattatgtagacattttccaaca 24379279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 407 - 604
Target Start/End: Original strand, 2727 - 2937
Alignment:
Q  407 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacat-gagaa 501  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||| | ||||||||||||||||  |||| ||||||| |||||    
T  2727 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaa 2826  T
Q  502 ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcag 590  Q
    ||||||||||||||||||| | || ||||||           |||| |||||||||||  | || ||||||||||||||||||| ||||||||||||||     
T  2827 ggttttccacgctaaaattctctt-tgtgtcattacgcttatatttcacgtttccgct--agtgtctattttgagttcacggagaagggaaattatgcat 2923  T
Q  591 gcatttcccaacat 604  Q
    ||||||||||||||    
T  2924 gcatttcccaacat 2937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 354 - 603
Target Start/End: Complemental strand, 9757480 - 9757212
Alignment:
Q  354 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 447  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  9757480 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata 9757381  T
Q  448 gtgga---gatttaagaggcctacgggtcccgtggttttt-ccttactcaca-tgagaaggttttccacgctaaaattttgttgtgtgtc---------- 532  Q
    |||||     ||||||||||| | |||||||||||||||| |||| |||||| ||||||||||||||||||||||||| | || ||||||              
T  9757380 gtggaagttttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccacgctaaaattctctt-tgtgtcattacgctta 9757282  T
Q  533 -attttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 603  Q
     |||| |||||||||||  | |||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  9757281 tatttcacgtttccgct--agtgcctattttgagttcacggaggaaggaaattatgcaggcatttaccaaca 9757212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 409 - 520
Target Start/End: Complemental strand, 42683038 - 42682924
Alignment:
Q  409 cacctgagggtgaagat-ttgtattcccattattattatagtgg-agatttaagaggcctacgggtcccgtggtttttccttactcaca-tgagaaggtt 505  Q
    ||||| ||||||||| | ||||||||||||||| |||||||||| || ||||||||| | | |||||||||| ||||||||| |||||| ||||||||||    
T  42683038 cacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtgatttttcctttctcacattgagaaggtt 42682939  T
Q  506 ttccacgctaaaatt 520  Q
    ||||||||| |||||    
T  42682938 ttccacgctgaaatt 42682924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 426 - 522
Target Start/End: Complemental strand, 37287069 - 37286972
Alignment:
Q  426 ttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcaca-tgagaaggttttccacgctaaaatttt 522  Q
    ||||||||  |||||||||||||||||  ||||||| || || |||||||||| |||||||||  ||||| ||||||||||||||| |||||||||||    
T  37287069 ttgtattcttattattattatagtggaagtttaagatgcttaagggtcccgtgatttttcctttttcacattgagaaggttttccatgctaaaatttt 37286972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 553 - 603
Target Start/End: Complemental strand, 342267 - 342217
Alignment:
Q  553 tgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 603  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  342267 tgcctattttgagttcacggaggaggaaaattatgcaggcattttccaaca 342217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 520
Target Start/End: Complemental strand, 342404 - 342306
Alignment:
Q  426 ttgtattcccattattattatagtgg-agatttaagaggcctacgggtcccgtggttt-ttcc-ttactcaca-tgagaaggttttccacgctaaaatt 520  Q
    ||||||||||||||| |||||||||| || ||||||||||| | || ||||||||||| |||| || |||| | |||||||||||| ||||||||||||    
T  342404 ttgtattcccattatcattatagtggaagttttaagaggcccaaggatcccgtggtttcttccatttctcatattgagaaggtttttcacgctaaaatt 342306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 426 - 518
Target Start/End: Original strand, 37037942 - 37038035
Alignment:
Q  426 ttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcaca-tgagaaggttttccacgctaaaa 518  Q
    |||||||| ||||||  |||||||| |  ||||||||||| | |||||||||||||| ||||| |||||| |||||||||||||| ||||||||    
T  37037942 ttgtattctcattatcgttatagtgaaagtttaagaggcccaagggtcccgtggtttctcctttctcacattgagaaggttttcctcgctaaaa 37038035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 553 - 589
Target Start/End: Original strand, 37038076 - 37038112
Alignment:
Q  553 tgcctattttgagttcacggaggagggaaattatgca 589  Q
    ||||||||||||||||||||||||| |||||||||||    
T  37038076 tgcctattttgagttcacggaggagagaaattatgca 37038112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University