View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9832_low_12 (Length: 270)
Name: NF9832_low_12
Description: NF9832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9832_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 14869562 - 14869310
Alignment:
| Q |
1 |
tcaaacagtgatccatagctttttctctctgaatctttaatcattttcatcaaataagtgtaatcattcggtgctctaagccaatccggaagttgtaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14869562 |
tcaaacagtgatccatagctttttctctctgaatctttaatcattttcatcaaataagtgtaatcattcggtgctctaagccaatccggaagttgtaaac |
14869463 |
T |
|
| Q |
101 |
gtttcatttccaccttgtgaggcaacccaggaagaagaaaactctcgctattcaatttaactttcgcctgaggtgagaagtgttcaatagagttcattgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14869462 |
gtttcatttccaccttgtgaggcaacccaggaagaagaaaactctcgctattcaatttaactttcgcctgaggtgagaagtgttcaatagagttcattgc |
14869363 |
T |
|
| Q |
201 |
agaatgagcaaagtaacttccactaatgcaaattaaccttggaattcccaatt |
253 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14869362 |
agaatgagcaaagtaacttccactaatacaaattaaccttggaattcccaatt |
14869310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 16909106 - 16909358
Alignment:
| Q |
1 |
tcaaacagtgatccatagctttttctctctgaatctttaatcattttcatcaaataagtgtaatcattcggtgctctaagccaatccggaagttgtaaac |
100 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||| ||||| |||||||||||||| ||| |||| |||||||||||||||||||||||||| |||| |
|
|
| T |
16909106 |
tcaaacaatgatccatagctttttttctctgaatctttgatcatcttcatcaaataagtataaccatttggtgctctaagccaatccggaagttgcaaac |
16909205 |
T |
|
| Q |
101 |
gtttcatttccaccttgtgaggcaacccaggaagaagaaaactctcgctattcaatttaactttcgcctgaggtgagaagtgttcaatagagttcattgc |
200 |
Q |
| |
|
| |||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||||| || |||||| || |||||||||||||||||||| |
|
|
| T |
16909206 |
gcgtcatttccacgttgtgaggcaacccaggaagcagaaaacttacgctattcgatttaactttggcatgaggttcaaattgttcaatagagttcattgc |
16909305 |
T |
|
| Q |
201 |
agaatgagcaaagtaacttccactaatgcaaattaaccttggaattcccaatt |
253 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
16909306 |
agaatgagcaaagtaacttccaccaatacaaatcaaccttggaattcccaatt |
16909358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University