View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9832_low_16 (Length: 238)
Name: NF9832_low_16
Description: NF9832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9832_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1734889 - 1734668
Alignment:
| Q |
1 |
ataatgaaattcaccatagttggggggagaccaatttgcgttagcacattatgaataaacgaccatttgatagaatcataaaccttagcaagataaactt |
100 |
Q |
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| T |
1734889 |
ataatgaaattcaccatagttgggggaagaccaatttgcgttagcacattatgaataaacgaccatttgatagaatcataaaccttagcaagataaactt |
1734790 |
T |
|
| Q |
101 |
ttgattgcaaaatagccaatatttcttctcattttagccatactatgaagcatctcctgaacaataacaatactctcacttattttcctcctcggtacaa |
200 |
Q |
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| T |
1734789 |
ttgattgcaaaatagccaatatttcttctcattttagccatactatgaagcatctcctgaacaataacaatactctcacttattttcctcctcggtacaa |
1734690 |
T |
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| Q |
201 |
aatccgtgcaatacaaagactt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
1734689 |
aatccgtgcaatacaaagactt |
1734668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 48577580 - 48577508
Alignment:
| Q |
100 |
tttgattgcaaaatagccaatatttcttctcattttagccatactatgaagcatctcctgaacaataacaata |
172 |
Q |
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|||||||||||||||| |||| || ||| ||||||||||||||||||| || |||| || | | ||||||||| |
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| T |
48577580 |
tttgattgcaaaatagacaattttgcttttcattttagccatactatgtagaatctactaagcgataacaata |
48577508 |
T |
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