View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9832_low_18 (Length: 236)
Name: NF9832_low_18
Description: NF9832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9832_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 17454732 - 17454498
Alignment:
| Q |
10 |
ctacacatgccagtttttcatagtccgcattcttggatcgtaatggagtcaaaataccaggtttcaaattcggatatgnnnnnnn----------ctgtt |
99 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| |
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| T |
17454732 |
ctacacatgccagtttttcagagtccgcattcttggatcgtaatggagtcaaaataccgggtttcaaattcagatatgaaaaaaaaaaaaaaaaactgtt |
17454633 |
T |
|
| Q |
100 |
tctttgctatcaacaagttaagaacagaatctcccacgtattccgactactcataagataagtcattttcagcaccataagtgttgtgtgaaagcctctt |
199 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17454632 |
tctttgctatcaacaagttaagaacaacacctcccacgtattccgactactcataagataagtcattttcagcaccataagtgctgtgtgaaagcctctt |
17454533 |
T |
|
| Q |
200 |
ccaataagtgcttattcttaaactcatatcctatg |
234 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |
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| T |
17454532 |
ccaataagtgtttattcttaaactcatatcctatg |
17454498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 17453801 - 17454012
Alignment:
| Q |
22 |
gtttttcatagtccgcattcttggatcgtaatggagtcaaaataccaggtttcaaattcggatatgnnnnnnnctgtttctttgctatcaacaagttaag |
121 |
Q |
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|||||| | ||||| ||||||| ||| ||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
17453801 |
gttttttagagtccacattcttagattgtaatggagtcaaaatacc-ggtttcaaatttggatatgaaaaaaactgtttctttgctatcaacaagttaat |
17453899 |
T |
|
| Q |
122 |
aacagaatctcccacgtattccgactactcataagataagtcattttcagcaccataagtgttgtgtgaaagcctcttccaataagtgcttattcttaaa |
221 |
Q |
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| T |
17453900 |
aacaacatctcccatgtattccgactactcataagataaatcattttcagcaccataagtgctgtgtgaaagcctctttcaataagtgcttattcttaaa |
17453999 |
T |
|
| Q |
222 |
ctcatatcctatg |
234 |
Q |
| |
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||||||||||||| |
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| T |
17454000 |
ctcatatcctatg |
17454012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 36173539 - 36173757
Alignment:
| Q |
12 |
acacatgccagtttttcatagtccgcattcttggatcgtaatggagtcaaaataccaggtttcaaattcggatatgnnnnnnnctgtttctttgctatca |
111 |
Q |
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|||| |||||| |||||| ||||| ||||| |||||||| ||||||||| | || |||||||| ||||||| ||||| |||||||| || |
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| T |
36173539 |
acacgtgccagcttttcagagtccacattc----atcgtaatagagtcaaaaaatttggcttcaaatttggatatgaaaagaactgttcctttgctacca |
36173634 |
T |
|
| Q |
112 |
acaagttaagaacagaatctcccacgtattccgactactcataagataagtcattttcagcaccataagtgtt--gtgtgaaagcctcttccaataagtg |
209 |
Q |
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||||| |||||||| ||| |||| |||||| | | ||||||||| || |||| ||| || ||||||||| | ||||||||||||||||||||||||| |
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| T |
36173635 |
acaagccaagaacagcatcacccaaatattccaattgctcataagacaaatcatcttccgctccataagtgctatgtgtgaaagcctcttccaataagtg |
36173734 |
T |
|
| Q |
210 |
cttattcttaaactcatatccta |
232 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
36173735 |
cttattcttaaactcatatccta |
36173757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 36160233 - 36160444
Alignment:
| Q |
17 |
tgccagtttttcatagtccgcattcttggatcgtaatggagtcaaaataccaggtttcaaattcggatatgnnnnnnnctgtttctttgctatcaacaag |
116 |
Q |
| |
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|||||| |||||| ||||| |||| || || || ||| ||||||||||||||||||||||||| ||||||| ||||| | |||| ||||||||| |
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| T |
36160233 |
tgccagcttttcagagtccacattttttgaccgcaattgagtcaaaataccaggtttcaaatttggatatgaaacaaactgttcccttgccatcaacaag |
36160332 |
T |
|
| Q |
117 |
ttaagaacagaatctcccacgtattccgactactcataagataagtcattttcagcaccataagtg--ttgtgtgaaagcctcttccaataagtgcttat |
214 |
Q |
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|||||||||| ||| || || |||||| | ||||||| ||||| ||||| || |||||| ||||||| ||||||||||||||| ||||| | |
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| T |
36160333 |
ttaagaacagcatcacctacatattccaatcgctcataa------tcattctcagctccgtaagtggtatgtgtgagagcctcttccaataactgcttgt |
36160426 |
T |
|
| Q |
215 |
tcttaaactcatatccta |
232 |
Q |
| |
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|||||||||||||||||| |
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| T |
36160427 |
tcttaaactcatatccta |
36160444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 10489731 - 10489538
Alignment:
| Q |
12 |
acacatgccagtttttcatagtccgcattcttggatcgtaatggagtcaaaataccaggtttcaaattcggatatgnnnnnnnctgtttctttgctatca |
111 |
Q |
| |
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|||| |||||||||||| ||| || |||| |||||||||||| ||||||||||||| |||||||||| ||||||| ||||| ||| | |||| |
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| T |
10489731 |
acacgtgccagtttttcgtagaccacatttttggatcgtaatagagtcaaaatacctagtttcaaatttggatatgaaaaaaactgttctttttcaatca |
10489632 |
T |
|
| Q |
112 |
acaagttaagaacagaatctcccacgtattccgactactcataagataagtcattttcagcaccataagtg--ttgtgtgaaagcctcttccaat |
204 |
Q |
| |
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||| |||||||||| ||| ||| || || || ||| |||||||||||||||||||||| |||| |||||| ||||||||||||||||||||| |
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| T |
10489631 |
acatgttaagaacaacatcaccc-cgaatcccaactgctcataagataagtcattttcaacaccgtaagtgctatgtgtgaaagcctcttccaat |
10489538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 10488899 - 10489011
Alignment:
| Q |
96 |
tgtttctttgctatcaacaagttaagaacagaatctcccacgtattccgactactcataagataagtcattttcagcaccataagtg--ttgtgtgaaag |
193 |
Q |
| |
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|||| |||| |||||||||||||||||||| ||| || ||||||||| || || |||||||| |||||||||||||| |||||| |||||||||| |
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| T |
10488899 |
tgttccttttctatcaacaagttaagaacaacatcaccgacgtattccaaccgcttataagatatgtcattttcagcactgtaagtgctatgtgtgaaag |
10488998 |
T |
|
| Q |
194 |
cctcttccaataa |
206 |
Q |
| |
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||||||||||||| |
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| T |
10488999 |
cctcttccaataa |
10489011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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