View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9832_low_2 (Length: 599)
Name: NF9832_low_2
Description: NF9832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9832_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Original strand, 51735714 - 51736299
Alignment:
| Q |
1 |
ttgattgcttgaatcttgatatggccaattattgataattttagtacataaaacccaaccaggaatacatatgatgtgatatatgttaggatagtttgct |
100 |
Q |
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| T |
51735714 |
ttgattgcttgaatcttgatatggccaattattgataattttagtacataaaacccaaccaggaatacatatgatgtgatatatgttaggatagtttgct |
51735813 |
T |
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| Q |
101 |
ttattataaaaaacaaataaatcattgtgtagaaatttctcatatgaatagatatggtcctaaccataataatcttgttcaactgcaggaggctctctga |
200 |
Q |
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| T |
51735814 |
ttattataaaaaataaataaatcattgtgtagaaatttctcatatgaatagatatggtcctaaccataataatcttgtccaactgcaggaggctctctga |
51735913 |
T |
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| Q |
201 |
tgttttgagcatgttatctacaaagcaaccaggttgtccacaattatacatgtatagttctgcagacagagttattcccgctgattcagtggaatcgttc |
300 |
Q |
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| T |
51735914 |
tgttttgagcatgttatctacaaagcaaccaggttgtccacaattatacatgtatagttctgcagacagagttattcccgctgattcagtggaatcgttc |
51736013 |
T |
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| Q |
301 |
gtcaatgcacagcgtaaggctggacatgatgtgagagcttgcaattttgtctcctcacctcatgttgaccactttcgaaatgacccgatattgtatactt |
400 |
Q |
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| T |
51736014 |
gtcaatgcacagcgtaaggctggacatgatgtgagagcttgcaattttgtctcctcacctcatgttgaccactttcgaaatgacccgatattgtatactt |
51736113 |
T |
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| Q |
401 |
ctcagctcagtcaatttttagaggagtgtgttattgaccaatgtaaatctcactaattcattgcttggctcactcatacagcatatagtttattcttttt |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51736114 |
ctcagctcagtcaatttttagaggagtgtgttattgaccaatgtaaatctcactaattcatcgcttggctcactcatacagcatatagtttattcttttt |
51736213 |
T |
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| Q |
501 |
gatttttgagggagggatgccattccattaattgatgggtggtttggaattttaaaagtcaacccc-ttaagggatcatataattg |
585 |
Q |
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| T |
51736214 |
gatttttgagggagggatgccattccattaattgatgggtggtttggaattttaaaagtcaacccctttaagggatcatataattg |
51736299 |
T |
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