View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9832_low_21 (Length: 229)
Name: NF9832_low_21
Description: NF9832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9832_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 217
Target Start/End: Complemental strand, 17455156 - 17454946
Alignment:
| Q |
7 |
tgattgagggtctatttgtttgatctaatgcgtagtgctaagaatacagatttgagtagttgtaaatgcatataactattccttttttcatgcaagcatt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17455156 |
tgattgagggtctatttgtttgatctaatgcgtagtgctaagaatacagatttgagtagttgtaaatgcatataactaatccttttttcatgcaagcatt |
17455057 |
T |
|
| Q |
107 |
ccataaaatggatacatgtaatacaaagtttttaatattgttgatatattccatcacccccctatttcattagaagagggaaagaaaggaaaaattaatg |
206 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17455056 |
ccctaaaatggatacatgtaatacaaagtttttaatattgttgatatgttccatcacccccctatttcattagaagagggaaagaaaggaaaaattaatg |
17454957 |
T |
|
| Q |
207 |
gataaggtgac |
217 |
Q |
| |
|
||||||||||| |
|
|
| T |
17454956 |
gataaggtgac |
17454946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 17461750 - 17461886
Alignment:
| Q |
7 |
tgattgagggtctatttgtttgatctaatgcgtagtgctaagaatacagatttgagtag------ttgtaaatgcatataactat----------tcctt |
90 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||| |||| ||||| |||||||||| |||||||||||||| | ||| | ||| |
|
|
| T |
17461750 |
tgattgaggttctatttgtttgatctaattcgtagtgttaagtatacaaatttgagtaggtggagttgtaaatgcatattagtatattactcattttctt |
17461849 |
T |
|
| Q |
91 |
ttttcatgcaagcattccataaaatggatacatgtaa |
127 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
17461850 |
ttctcatgcaagcattccataaaatggatacttgtaa |
17461886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 774843 - 774778
Alignment:
| Q |
88 |
cttttttcatgcaagcattccataaaatggatacatgtaatacaaagtttttaatattgttgatata |
154 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||| |||||| ||| |||||||||||||| |
|
|
| T |
774843 |
cttttttcatgcaagcattccctaaaatggatacttgtaaaacaaag-tttagatattgttgatata |
774778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University