View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9832_low_23 (Length: 212)
Name: NF9832_low_23
Description: NF9832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9832_low_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 109; Significance: 5e-55; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 41033247 - 41033428
Alignment:
| Q |
12 |
tattaaattttgcaatattgtgattcaaataatataaacgtgttatcctaaagttgnnnnnnnnnnnnnnnnnnncacaagtattaattaaaccttaaat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41033247 |
tattaaattttgcaatattgtgattcaaatgatgtaaacgtgttatcctaaagttgaaatatataaaataaaaaacacaagtattaattaaaccttaaat |
41033346 |
T |
|
| Q |
112 |
atcctgtgacaatatatattttctcctcaaactaagaagaaagcttccaaccaagaagcaacaatctcaaaaatcagcagga |
193 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41033347 |
atcctatgacaatatatattttctcctcaaactaagaagaaagcttccaaccaagaagcaacaatctccaaaatcagcagga |
41033428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 193
Target Start/End: Original strand, 41039980 - 41040077
Alignment:
| Q |
94 |
attaattaaaccttaaatatcctgtgacaatatatattttctcctcaaactaagaagaaagcttccaaccaagaagcaacaatctcaaaaatcagcagga |
193 |
Q |
| |
|
|||||||| |||||| ||||| | |||||||| || ||||||| |||||||||||||||| | ||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
41039980 |
attaattagaccttatatatc-tatgacaatagatcttttctcttcaaactaagaagaaa-catccaaccaagaggcaacaatctccaaaatcagcagga |
41040077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 39962419 - 39962468
Alignment:
| Q |
13 |
attaaattttgcaatattgtgattcaaataatataaacgtgttatcctaa |
62 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
39962419 |
attaaattttgcaatattgtgatgcaaattatataaatgtgttatcctaa |
39962468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 43617291 - 43617239
Alignment:
| Q |
15 |
taaattttgcaatattgtgattcaaataatataaacgtgttatcctaaagttg |
67 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
43617291 |
taaattttgcaatattgtgatgcaatggatataaatgtgttatcctaaagttg |
43617239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University