View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9832_low_3 (Length: 542)

Name: NF9832_low_3
Description: NF9832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9832_low_3
NF9832_low_3
[»] chr2 (3 HSPs)
chr2 (20-144)||(3083050-3083174)
chr2 (43-144)||(38403845-38403943)
chr2 (217-248)||(38403633-38403664)
[»] chr1 (5 HSPs)
chr1 (20-132)||(40909811-40909923)
chr1 (81-148)||(33814025-33814092)
chr1 (81-148)||(33873495-33873562)
chr1 (217-252)||(33813816-33813851)
chr1 (217-246)||(33873292-33873321)
[»] scaffold0036 (2 HSPs)
scaffold0036 (43-144)||(99435-99533)
scaffold0036 (217-252)||(99219-99254)
[»] chr7 (1 HSPs)
chr7 (463-536)||(1971670-1971743)
[»] chr4 (2 HSPs)
chr4 (278-410)||(44983516-44983654)
chr4 (404-460)||(47528410-47528466)
[»] chr8 (2 HSPs)
chr8 (463-536)||(19962652-19962725)
chr8 (217-252)||(36236266-36236301)
[»] chr3 (2 HSPs)
chr3 (217-252)||(31232175-31232210)
chr3 (496-534)||(32395041-32395079)


Alignment Details
Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 3083174 - 3083050
Alignment:
Q  20 caattaaggcttgtgcacatgtatgttaactccaatagcagtctcctcattctcagtccctaaatgaataaagcagtacaccagaaattggacatccttg 119  Q
    ||||||| | |||||||||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||| |||||| ||||||||||||||||    
T  3083174 caattaaagtttgtgcacatgtatgttaactccaatagcagtttcctcattctccacccctaaatgaataaagcagaacaccaaaaattggacatccttg 3083075  T
Q  120 taagtaacaaacctgctgccttaca 144  Q
    ||||||||||||| |||||||||||    
T  3083074 taagtaacaaaccagctgccttaca 3083050  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 38403943 - 38403845
Alignment:
Q  43 tgttaactccaatagcagtctcctcattctcagtccctaaatgaataaagcagtacaccagaaattggacatccttgtaagtaacaaacctgctgcctta 142  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||   |||||| |||||||||||| |||||||||| |||||||||||||||    
T  38403943 tgttaactccaatggcagtctcctcattctcagcccctaaatgaataaagc---acaccaaaaattggacatcattgtaagtaataaacctgctgcctta 38403847  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 248
Target Start/End: Complemental strand, 38403664 - 38403633
Alignment:
Q  217 tttgcaatcgctacaaaaccaacatgaaccta 248  Q
    ||||||||||||||||||||||||||||||||    
T  38403664 tttgcaatcgctacaaaaccaacatgaaccta 38403633  T

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Target: chr1 (Bit Score: 81; Significance: 7e-38; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 40909923 - 40909811
Alignment:
Q  20 caattaaggcttgtgcacatgtatgttaactccaatagcagtctcctcattctcagtccctaaatgaataaagcagtacaccagaaattggacatccttg 119  Q
    ||||||| | |||||||||||||||||||||||||||||||| |||| |||||| | ||||||||||||||||||| |||||| ||||||||||||||||    
T  40909923 caattaaagtttgtgcacatgtatgttaactccaatagcagtttccttattctccgcccctaaatgaataaagcagaacaccaaaaattggacatccttg 40909824  T
Q  120 taagtaacaaacc 132  Q
    |||||||||||||    
T  40909823 taagtaacaaacc 40909811  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 33814092 - 33814025
Alignment:
Q  81 aaatgaataaagcagtacaccagaaattggacatccttgtaagtaacaaacctgctgccttacatacc 148  Q
    ||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  33814092 aaatgaataaagcagcacaccaaaaattgaacatccttgtaagtaacaaacctgctgccttacatacc 33814025  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 33873562 - 33873495
Alignment:
Q  81 aaatgaataaagcagtacaccagaaattggacatccttgtaagtaacaaacctgctgccttacatacc 148  Q
    ||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  33873562 aaatgaataaagcagcacaccaaaaattgaacatccttgtaagtaacaaacctgctgccttacatacc 33873495  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 252
Target Start/End: Complemental strand, 33813851 - 33813816
Alignment:
Q  217 tttgcaatcgctacaaaaccaacatgaacctatcaa 252  Q
    ||||||||||||||||||||||||||||||| ||||    
T  33813851 tttgcaatcgctacaaaaccaacatgaacctgtcaa 33813816  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 246
Target Start/End: Complemental strand, 33873321 - 33873292
Alignment:
Q  217 tttgcaatcgctacaaaaccaacatgaacc 246  Q
    ||||||||||||||||||||||||||||||    
T  33873321 tttgcaatcgctacaaaaccaacatgaacc 33873292  T

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Target: scaffold0036 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 99533 - 99435
Alignment:
Q  43 tgttaactccaatagcagtctcctcattctcagtccctaaatgaataaagcagtacaccagaaattggacatccttgtaagtaacaaacctgctgcctta 142  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||   |||||| ||||||||||||||||||||||| |||||||||||||||    
T  99533 tgttaactccaatggcagtctcctcattctcagcccctaaatgaataaagc---acaccaaaaattggacatccttgtaagtaataaacctgctgcctta 99437  T

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Target: scaffold0036; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 252
Target Start/End: Complemental strand, 99254 - 99219
Alignment:
Q  217 tttgcaatcgctacaaaaccaacatgaacctatcaa 252  Q
    ||||||||||||||||||||||||||||||| ||||    
T  99254 tttgcaatcgctacaaaaccaacatgaacctgtcaa 99219  T

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Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 463 - 536
Target Start/End: Complemental strand, 1971743 - 1971670
Alignment:
Q  463 aattaaaaataaacaaaactcaccgcgataaacaaagctccaacagacccaaaagcttccttcagaacaccaaa 536  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1971743 aattaaaaataaacaaaactcaccgcgataaacaaagctccaacagacccaaaagcttccttcataacaccaaa 1971670  T

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Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 278 - 410
Target Start/End: Original strand, 44983516 - 44983654
Alignment:
Q  278 cagaataagtggattgtgtttcacgttaa-----tattaa-agtataacagaacacgaccaaaaccgataaaagtgatatatcttgattctaacacagcc 371  Q
    ||||||||||||||| |||||||||||||     |||||| | |||||||||||||||||||  |||||||||||||||||| ||||||| |||||  ||    
T  44983516 cagaataagtggattttgtttcacgttaagtgcatattaatattataacagaacacgaccaacgccgataaaagtgatatattttgattcaaacactacc 44983615  T
Q  372 ttcaaaagcacttccacataacacaaagagtaatttcca 410  Q
    |||| ||||||||||||| ||||||  ||||||||||||    
T  44983616 ttcataagcacttccacagaacacactgagtaatttcca 44983654  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 460
Target Start/End: Complemental strand, 47528466 - 47528410
Alignment:
Q  404 atttccagaatcatacaaacagcccaaatgtaacagcacagaaaacttaacataaat 460  Q
    |||| |||||||||||||| |  |||||||||||||||  |||||||||||||||||    
T  47528466 attttcagaatcatacaaagaaaccaaatgtaacagcagggaaaacttaacataaat 47528410  T

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Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 463 - 536
Target Start/End: Complemental strand, 19962725 - 19962652
Alignment:
Q  463 aattaaaaataaacaaaactcaccgcgataaacaaagctccaacagacccaaaagcttccttcagaacaccaaa 536  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  19962725 aattaaaaataaacaaaactcaccgtgataaacaaagctccaacagactcaaaagcttccttcataacaccaaa 19962652  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 252
Target Start/End: Original strand, 36236266 - 36236301
Alignment:
Q  217 tttgcaatcgctacaaaaccaacatgaacctatcaa 252  Q
    ||||||||||||||||||||||||||||||| ||||    
T  36236266 tttgcaatcgctacaaaaccaacatgaacctgtcaa 36236301  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 252
Target Start/End: Complemental strand, 31232210 - 31232175
Alignment:
Q  217 tttgcaatcgctacaaaaccaacatgaacctatcaa 252  Q
    ||||||||||||||||||||||||||||||| ||||    
T  31232210 tttgcaatcgctacaaaaccaacatgaacctgtcaa 31232175  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 534
Target Start/End: Complemental strand, 32395079 - 32395041
Alignment:
Q  496 aaagctccaacagacccaaaagcttccttcagaacacca 534  Q
    ||||||||||| ||||||||||||||||||| |||||||    
T  32395079 aaagctccaacggacccaaaagcttccttcataacacca 32395041  T

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