View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9832_low_6 (Length: 409)
Name: NF9832_low_6
Description: NF9832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9832_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 232 - 394
Target Start/End: Original strand, 21841770 - 21841938
Alignment:
| Q |
232 |
taattaggaacttattgtaaatcctcttaaagaagtgtaacccttcctactttgactttgtatcgcactaacacaaacataaacccaagatctatccttg |
331 |
Q |
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| T |
21841770 |
taattaggaacttattgtaaatactcttaaagaattgtaacccttcctactttgactttgtatcgcactaacacaaacttaaacccaagatctatccttg |
21841869 |
T |
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| Q |
332 |
cacattagcagcaactggttaaattctttagtg------aacaatgaccggtctttccacaatcatagc |
394 |
Q |
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| T |
21841870 |
cacattagcagcaactggttaaattcattagtgactttaaacaatgaccggtcattccaaaatcatagc |
21841938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 21841554 - 21841700
Alignment:
| Q |
16 |
tttcgtgttgaatgatgaatgatcaatgttaatgttagaaaaacaataggttcaaagaaaaatatctttatattatgctttgatgataacatgactatta |
115 |
Q |
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| T |
21841554 |
tttcatgttgaatgatgaatgatcaatgttaatgttagaaaaacaataggttcaaagaaaaatatctttgga-----ctttgatgatatcatgactatta |
21841648 |
T |
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| Q |
116 |
gtaaatgaataatttttctactaactatgcttatgatcatgcaggttagtac |
167 |
Q |
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| T |
21841649 |
ataaatgaataatttttctactaactatgcttatgatcatgcaggttagtac |
21841700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 17562513 - 17562585
Alignment:
| Q |
69 |
aaagaaaaatatctttatattatgctttgatgataacatgactattagtaaatgaataatttttctactaact |
141 |
Q |
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| T |
17562513 |
aaagaacaatatctatatattatgttttgatgataacaagactattaataaaggaacaatttatctaccaact |
17562585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 4387831 - 4387881
Alignment:
| Q |
62 |
taggttcaaagaaaaatatctttatattatgctttgatgataacatgacta |
112 |
Q |
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| T |
4387831 |
taggttcaaagaagaatatctatgtattatgttttgatgataacaagacta |
4387881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 158
Target Start/End: Complemental strand, 22536787 - 22536690
Alignment:
| Q |
61 |
ataggttcaaagaaaaatatctttatattatgctttgatgataacatgactattagtaaatgaataatttttctactaactatgcttatgatcatgca |
158 |
Q |
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| T |
22536787 |
ataggttcaaagaacaatatctctttattatgttttgataataacaagactaataataaaggaacaatttttctacttactttgtttacgatcatgca |
22536690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 167
Target Start/End: Original strand, 16891809 - 16891914
Alignment:
| Q |
62 |
taggttcaaagaaaaatatctttatattatgctttgatgataacatgactattagtaaatgaataatttttctactaactatgcttatgatcatgcaggt |
161 |
Q |
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||||||||||| | || |||| ||| |||| ||||||||||| ||||||||| |||| ||||||||| || | ||||| || || ||| ||||||||| |
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| T |
16891809 |
taggttcaaagcacaaaatctctatgttatattttgatgataatatgactattgataaaggaataatttgtcaattaactgtgtttttgagcatgcaggt |
16891908 |
T |
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| Q |
162 |
tagtac |
167 |
Q |
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| T |
16891909 |
tagtac |
16891914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 5481592 - 5481642
Alignment:
| Q |
62 |
taggttcaaagaaaaatatctttatattatgctttgatgataacatgacta |
112 |
Q |
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| T |
5481592 |
taggttcaaaaaacaatatccttatattatgttttgatgataacaagacta |
5481642 |
T |
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