View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9832_low_7 (Length: 392)
Name: NF9832_low_7
Description: NF9832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9832_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 11 - 377
Target Start/End: Complemental strand, 40869700 - 40869334
Alignment:
| Q |
11 |
caaagggatccagttggtgctgcagatagtccagattggttccccctaagttctggatctacttatgaaggataattggtccatttgaagaatgagttgc |
110 |
Q |
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| T |
40869700 |
caaaaggatccagttggtgctgcagatagtccagattggttccccctaagttctggatctacttatgaaggataattggtccatttgaagaatgagttgc |
40869601 |
T |
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| Q |
111 |
tcagtgtctcgtataaataagtgtctaatctagcataaaatcaatgagtgataattcattttatcaactctttttcacaggtgaaaattcttagaacaca |
210 |
Q |
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| T |
40869600 |
tcagtgtctcgtataaataagtgtctaatctagcataaaatcaacgagtgataattcattttatcaactctttttcacaggtgaaaattcttagaacaca |
40869501 |
T |
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| Q |
211 |
atactgttggatcttacagagcataaatcagtttgagtttcagggaaagcaaataactgctaataaggatcaagaaatccagttaatgcnnnnnnnnatg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40869500 |
atactgttggatcttacagagcataaatcagtttgagtttcagggaaagcaaataactgctaataaggatcaagaaatccagttaatgcttttctttatg |
40869401 |
T |
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| Q |
311 |
tacgatatcagattacagaccctatggcacattcttaccttgataaaatgatattagatagctacat |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40869400 |
tacgatatcagattacagaccctatggcacattcttaccttgataaaatgatattagatagctacat |
40869334 |
T |
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