View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9832_low_8 (Length: 392)
Name: NF9832_low_8
Description: NF9832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9832_low_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 5 - 392
Target Start/End: Complemental strand, 1735297 - 1734910
Alignment:
| Q |
5 |
agtttggagttaaatgaaagggggtgtatatagaattctagttgaggtgtgtaaaatgggggtgatgaggagtcatcaaatcctaaaattagcaagaaaa |
104 |
Q |
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| T |
1735297 |
agtttggaattaaatgaaaggggttgtatataaaactctagttgaggtgtgtaaaatgggggtgatgaggagtcatcaaatcctaaaattagtaagaaaa |
1735198 |
T |
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| Q |
105 |
tcctcgnnnnnnnnnnnnnnnncatcatacgatgaggaatcatcaaatactcatgcacatcatattatacatcggtatagtatgaatgagcgaccgagac |
204 |
Q |
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| T |
1735197 |
ttctcaaaaaaactcctaaaaacatcatacgatgaggagtcatcaaatactcatgcacattatattatacatcggtatagtatgaatgagcaaccgagac |
1735098 |
T |
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| Q |
205 |
aatgtaatacgccaaaccaaaatcaattatttcttctgcaaacataagataggagatatatggaccctctctacctgcttccataagttcatacaaagaa |
304 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
1735097 |
aatgtaatacgccaaaccaaaaccaattttttcttctgcaaacataagataggagatatatggaccctctctacctgctttcatcagttcatacaaagaa |
1734998 |
T |
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| Q |
305 |
caaacaaggagacattgtgtccccttgataaataccacattttggcatgaagaaattagatctagcaccacccacaagacattcattt |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1734997 |
caaacaaggagacattgtgtccccttgataaataccacattttggcatgaagaaattagatctagcaccacccacaagacattcattt |
1734910 |
T |
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